Helicobacter pylori PZ5019_3A3 |
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Putative Helicobacter pylori PZ5019_3A3 RM systems
Ref: Pazos,A. et al. unpublished
REBASE ref # 24002
Contig set: 1,673,393 bp
GenBank #: MTWM00000000 (NZ_MTWM00000000)
REBASE acronym: Hpy5019
Org_num: 24018
All begin BZK18_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5825 | S | S.HpySP101ORF7070P (45% identity) | S.Hpy5019ORF5825P | |
| 5830 | 499 aa hypothetical protein | |||
| 8220 | S | S.HpyR06ORF7030P (53% identity) | S.Hpy5019ORF8220P | |
| 4425 | metal-dependent hydrolase | |||
| 4430 | R | HpySP07XIVP (94% identity) | Hpy5019ORF4435P | |
| 4435 | M | M.HpySP803XV (96% identity) | M.Hpy5019ORF4435P | |
| 5130 | hydroxyethylthiazole kinase | |||
| 5135 | R | HpySP310ORF2590P (95% identity) | Hpy5019ORF5145P | |
| 5140 | S | S.HpyLI31ORF4220P (96% identity) | S.Hpy5019ORF5145P | |
| 5145 | M | M.HpySP314XIV (95% identity) | M.Hpy5019ORF5145P | |
| 5150 | type I restriction endonuclease subunit M | |||
| 7225 | 0 aa hypothetical protein | |||
| 7230 | S | S.Hpy380ORF6935P (97% identity) | S.Hpy5019ORF7235P | |
| 7235 | M | M.HpyU418ORF2165P (96% identity) | M.Hpy5019ORF7235P | |
| 7240 | R | HpyU311ORF2230P (93% identity) | Hpy5019ORF7235P | |
| 7245 | 631 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7840 | catalase | |||
| 7845 | R | HpyU206ORF2245P (98% identity) | Hpy5019ORF7850P | |
| 7850 | M | M.HpyGM9ORF2250P (98% identity) | ACGT | M.Hpy5019ORF7850P |
| 7855 | restriction endonuclease | |||
| 7850 | DNA (cytosine-5-)-methyltransferase | |||
| 7855 | R | HpyCOL206IIP (99% identity) | Hpy5019ORF7860P | |
| 7860 | M | M.HpyNG10II (98% identity) | ACNGT | M.Hpy5019ORF7860P |
| 7865 | GTP-binding protein TypA | |||
| 4245 | peptidase S41 | |||
| 4250 | R | HpyBR5VIIP (98% identity) | GANTC | Hpy5019ORF4255P |
| 4255 | M | M.HpyH023I (99% identity) | GANTC | M.Hpy5019ORF4255P |
| ??? | Uncharacterized protein | |||
| 7870 | glycosyltransferase 9 family protein | |||
| 7875 | M | M.HpyH023ORF2210P (97% identity) | ATTAAT | M.Hpy5019ORF7875P |
| 4255 | DNA methyltransferase | |||
| ??? | RM | Uncharacterized protein | Hpy5019ORF4260BP | |
| ??? | RM | HpyH012ORF6420P (68% identity) | Hpy5019ORF4260AP | |
| 4265 | nicotinate-nucleotide diphosphorylase | |||
| 7405 | methyltransferase | |||
| 7410 | M | M.HpyJO3XIII (99% identity) | TCNNGA | M.Hpy5019ORF7410P |
| 7415 | R | HpySP204VIIIP (99% identity) | TCNNGA | Hpy5019ORF7410P |
| 7420 | Laminin subunit alpha-2 precursor | |||
| 265 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 270 | M | M.HpyCO11IX (99% identity) | GTAC | M.Hpy5019ORF270P |
| 275 | R | HpyH004XIIP (96% identity) | Hpy5019ORF270P | |
| 280 | 406 aa hypothetical protein | |||
| 2940 | DEAD/DEAH box helicase | |||
| 2945 | RM | HpyB136AORF65P (61% identity) | Hpy5019ORF2945P | |
| 2950 | reverse transcriptase | |||
| 3455 | flagellar biosynthesis protein FlgM | |||
| 3460 | M | M.HpyBR7XI (95% identity) | M.Hpy5019ORF3460P | |
| 3465 | 144 aa hypothetical protein | |||
| 7580 | ATP-dependent DNA helicase | |||
| 7585 | M | M.HpyCOL301X (98% identity) | GTNNAC | M.Hpy5019ORF7585P |
| 7590 | R | Hpy8I (98% identity) | GTNNAC | Hpy5019ORF7585P |
| 7595 | flagellar hook protein FlgE | |||
| 5420 | acetone carboxylase subunit gamma | |||
| 5425 | R | HpyPE17ORF3810P (99% identity) | Hpy5019ORF5430P | |
| 5430 | M | M.HpyPOR110ORF2345P (99% identity) | CCNNGG | M.Hpy5019ORF5430P |
| 5435 | 3-5 exonuclease | |||
| 4315 | two-component system response regulator | |||
| 4320 | R | HpyPE13XIVP (92% identity) | Hpy5019ORF4325P | |
| 4325 | M | M.HpyU003XIV (90% identity) | M.Hpy5019ORF4325P | |
| 4330 | 68 aa hypothetical protein | |||
| 2720 | serine O-acetyltransferase | |||
| 2725 | R | HpyPO06IP (99% identity) | CATG | Hpy5019ORF2730P |
| 2730 | M | M.HpyCO7I (99% identity) | CATG | M.Hpy5019ORF2730P |
| 2735 | hydrolase | |||
| 6335 | exodeoxyribonuclease VII large subunit | |||
| 6340 | M | M.HpyC124ORF1310P (98% identity) | TCGA | M.Hpy5019ORF6340P |
| 6345 | 204 aa hypothetical protein | |||
| 6350 | R | HpyCOL104ORF4700P (92% identity) | CCGG | Hpy5019ORF6340P |
| 6355 | site-specific DNA-methyltransferase | |||
| 6350 | endonuclease | |||
| 6355 | M | M.HpySWT06I (100% identity) | CCGG | M.Hpy5019ORF6355P |
| 6360 | ATP-dependent chaperone ClpB | |||
| 5760 | 641 aa hypothetical protein | |||
| 5765 | M | M.HpyISR6XIII (99% identity) | TCNGA | M.Hpy5019ORF5765P |
| 5770 | R | 115 aa hypothetical protein | Hpy5019ORF5765P | |
| 5775 | purine-nucleoside phosphorylase | |||
| 3030 | 388 aa hypothetical protein | |||
| ??? | R | HpySW17ORF7020P (87% identity) | Hpy5019ORFAP | |
| 3040 | DNA cytosine methyltransferase | |||
| ??? | Restriction endonuclease | |||
| 3040 | M | M.HpyUM067ORF4540P (100% identity) | M.Hpy5019ORF3040P | |
| 3045 | permease | |||
| 3170 | amidophosphoribosyltransferase | |||
| 3175 | RM | HpyPE117ORF7325P (99% identity) | Hpy5019ORF3175P | |
| 3180 | S | S.Hpyfe83ORF275P (61% identity) | S.Hpy5019ORF3175P | |
| 3185 | DNA polymerase I | |||
| 6780 | elongation factor 4 | |||
| 6785 | M | M.HpyK048ORF1850P (99% identity) | M.Hpy5019ORF6785P | |
| 6790 | 92 aa hypothetical protein | |||
| 1720 | alpha-1,2-fucosyltransferase | |||
| 1725 | M | M.HpyNG10VIII (98% identity) | GATC | M.Hpy5019ORF1725P |
| 1730 | R | HpyCO4VIP (96% identity) | GATC | Hpy5019ORF1725P |
| 1740 | malonyl CoA-acyl carrier protein transacylase | |||
| 1905 | sodium/proline symporter | |||
| 1910 | M | M.HpyU004VII (96% identity) | CCTTC | M.Hpy5019ORF1910P |
| 1915 | R | HpyLI01VIIIP (97% identity) | Hpy5019ORF1910P | |
| 1920 | restriction endonuclease | |||
| 1915 | restriction endonuclease | |||
| 1920 | M | M2.HpySP15XIP (93% identity) | M2.Hpy5019ORF1920P | |
| 1925 | M | M1.HpyP110V (97% identity) | CCTC | M1.Hpy5019ORF1920P |
| 1930 | agmatine deiminase | |||
| 2455 | glycosyl transferase 8 family protein | |||
| 2460 | M | M.HpyNG17ORF7685P (84% identity) | M.Hpy5019ORF2460P | |
| 2465 | restriction endonuclease subunit M | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2930 | ATP-dependent DNA helicase RecG | |||
| 2935 | M | M.HpyCO10ORF6795P (96% identity) | M.Hpy5019ORF2935P | |
| 2940 | R | HpyBR23ORF6855P (97% identity) | Hpy5019ORF2935P | |
| 2945 | type II restriction endonuclease | |||
| 2460 | restriction endonuclease subunit M | |||
| ??? | M | M.HpyU424ORF7715P (94% identity) | M.Hpy5019ORF2465P | |
| 2475 | R | HpyBR7ORF7490P (93% identity) | Hpy5019ORF2465P | |
| 2480 | rod shape-determining protein MreC | |||
| 2525 | endonuclease | |||
| 2530 | M | M.HpyH012ORF7235P (98% identity) | M.Hpy5019ORF2530P | |
| 2535 | R | HpyCOL107ORF6815P (82% identity) | Hpy5019ORF2530P | |
| 2540 | type III restriction endonuclease subunit R | |||