Helicobacter pylori PZ5006_3A3 |
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Putative Helicobacter pylori PZ5006_3A3 RM systems
Ref: Pazos,A. et al. unpublished
REBASE ref # 24002
Contig set: 1,632,977 bp
GenBank #: MTWK00000000 (NZ_MTWK00000000)
REBASE acronym: Hpy5006
Org_num: 24015
All begin BZK26_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2070 | S | S.HpyC100XV (52% identity) | S.Hpy5006ORF2070P | |
| 2075 | 499 aa hypothetical protein | |||
| 8055 | S | S.HpyMT5118X (44% identity) | S.Hpy5006ORF8055P | |
| 65 | 631 aa hypothetical protein | |||
| 70 | R | HpyC103ORF2135P (88% identity) | Hpy5006ORF75P | |
| 75 | M | M.HpyMT5125VII (97% identity) | M.Hpy5006ORF75P | |
| 80 | S | S.HpySW02ORF3530P (97% identity) | S.Hpy5006ORF75P | |
| 85 | 0 aa hypothetical protein | |||
| 3495 | metal-dependent hydrolase | |||
| 3500 | R | HpyU403IVP (96% identity) | Hpy5006ORF3505P | |
| 3505 | M | M.HpyBR1ORF6780P (96% identity) | M.Hpy5006ORF3505P | |
| 3510 | S | S.HpyPOR115XI (96% identity) | S.Hpy5006ORF3505P | |
| 3515 | thymidylate synthase (FAD) | |||
| 1520 | phosphatase PAP2 family protein | |||
| 1525 | M | M.HpyME27ORF4420P (96% identity) | M.Hpy5006ORF1525P | |
| 5155 | hydroxyethylthiazole kinase | |||
| 5160 | R | HpyU413ORF4030P (97% identity) | Hpy5006ORF5160P | |
| 5165 | 88 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3405 | anthranilate synthase component I | |||
| 3410 | R | HpyLIM8VIIIP (94% identity) | Hpy5006ORF3415P | |
| 3415 | M | M.HpyME45XV (99% identity) | TGCA | M.Hpy5006ORF3415P |
| 3420 | 68 aa hypothetical protein | |||
| 7645 | R | HpyAL1IIIP (96% identity) | Hpy5006ORF7650P | |
| 7650 | M | M1.HpyU311VII (99% identity) | GAAGA | M1.Hpy5006ORF7650P |
| 7655 | M | M2.Hpyfe75ORF7255P (98% identity) | GAAGA | M2.Hpy5006ORF7650P |
| 7660 | response regulator | |||
| 3310 | M | M.HpyU305III (98% identity) | ATTAAT | M.Hpy5006ORF3310P |
| 3315 | glycosyltransferase 9 family protein | |||
| 7755 | M | M.HpyU203I (99% identity) | CATG | M.Hpy5006ORF7755P |
| 7760 | hydrolase | |||
| 6960 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 6965 | M | M.HpyU420VI (100% identity) | GAATTC | M.Hpy5006ORF6965P |
| 6970 | R | HpyBR2VIP (100% identity) | GAATTC | Hpy5006ORF6965P |
| 6975 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 3320 | GTP-binding protein TypA | |||
| 3325 | M | M.HpyCOL207II (93% identity) | ACNGT | M.Hpy5006ORF3325P |
| 3330 | R | HpyC122ORF4285P (87% identity) | Hpy5006ORF3325P | |
| 3335 | DNA (cytosine-5-)-methyltransferase | |||
| 7575 | alpha-1,2-fucosyltransferase | |||
| 7580 | M | M.HpyL014XI (96% identity) | GATC | M.Hpy5006ORF7580P |
| 7585 | 325 aa hypothetical protein | |||
| 3330 | restriction endonuclease | |||
| 3335 | M | M.HpyS300ORF5795P (50% identity) | M.Hpy5006ORF3335P | |
| 3340 | catalase | |||
| 7310 | peptidase S41 | |||
| 7315 | R | HpyNG19VIIP (99% identity) | Hpy5006ORF7320P | |
| 7320 | M | M.HpyNG19VII (100% identity) | GANTC | M.Hpy5006ORF7320P |
| 7325 | DNA methyltransferase | |||
| 1210 | 3-5 exonuclease | |||
| 1215 | M | M.HpyBR19ORF3380P (96% identity) | M.Hpy5006ORF1215P | |
| 1220 | R | HpySP609ORF3335P (100% identity) | Hpy5006ORF1215P | |
| 1225 | acetone carboxylase subunit gamma | |||
| 7320 | site-specific DNA-methyltransferase | |||
| 7325 | RM | HpyU311ORF6720P (84% identity) | Hpy5006ORF7325P | |
| 7330 | nicotinate-nucleotide diphosphorylase | |||
| 5245 | flagellar hook protein FlgE | |||
| 5250 | R | HpyMT5105ORF4395P (96% identity) | GTNNAC | Hpy5006ORF5255P |
| 5255 | M | M.HpyISR8IX (97% identity) | GTNNAC | M.Hpy5006ORF5255P |
| 5260 | ATP-dependent DNA helicase | |||
| 7475 | glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | HpyDO6ORF3190P (88% identity) | Hpy5006ORF7480P | |
| 7485 | 270 aa hypothetical protein | |||
| 4800 | Laminin subunit alpha-2 precursor | |||
| 4805 | R | Hpy300IVP (96% identity) | Hpy5006ORF4810P | |
| 4810 | M | M.HpyU420XIII (99% identity) | TCNNGA | M.Hpy5006ORF4810P |
| 4815 | methyltransferase | |||
| 6015 | flagellar biosynthesis protein FlgM | |||
| 6020 | M | M.HpyCRI4XII (98% identity) | GCGC | M.Hpy5006ORF6020P |
| 6025 | 144 aa hypothetical protein | |||
| 3575 | DEAD/DEAH box helicase | |||
| 3580 | RM | HpyU003ORF6890P (95% identity) | Hpy5006ORF3580P | |
| 3585 | reverse transcriptase | |||
| 3670 | 388 aa hypothetical protein | |||
| 3675 | R | HpyBR18IIIP (100% identity) | Hpy5006ORF3680P | |
| 3680 | M | M1.HpyMT5114III (100% identity) | M1.Hpy5006ORF3680P | |
| 3685 | M | M2.HpyBR18III (99% identity) | CCATC | M2.Hpy5006ORF3680P |
| 3690 | permease | |||
| 3815 | amidophosphoribosyltransferase | |||
| 3820 | RM | HpyBR18XIV (99% identity) | CYANNNNNNTGA | Hpy5006ORF3820P |
| 3825 | S | S1.HpyCO10ORF7040P (98% identity) | S1.Hpy5006ORF3820P | |
| 3830 | S | S.HpyDO1ORF6990P (43% identity) | S2.Hpy5006ORF3820P | |
| 3835 | DNA polymerase I | |||
| 4540 | agmatine deiminase | |||
| 4545 | M | M1.HpyDO4V (97% identity) | CCTC | M1.Hpy5006ORF4545P |
| 4550 | M | M2.HpyDO7IVP (96% identity) | M2.Hpy5006ORF4545P | |
| 4555 | sodium/proline symporter | |||
| 2985 | 406 aa hypothetical protein | |||
| 2990 | R | HpyBR23VIIIP (99% identity) | GTAC | Hpy5006ORF2995P |
| 2995 | M | M.HpySP317VIII (98% identity) | GTAC | M.Hpy5006ORF2995P |
| 3000 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 725 | 128 aa hypothetical protein | |||
| 730 | M | M.HpySP110VI (99% identity) | CTNAG | M.Hpy5006ORF730P |
| 735 | R | HpyPE110VIIIP (99% identity) | CTNAG | Hpy5006ORF730P |
| 740 | polysaccharide deacetylase | |||
| 975 | ATP-dependent chaperone ClpB | |||
| 980 | M | M.Hpy328ORF2250P (100% identity) | CCGG | M.Hpy5006ORF980P |
| 985 | R | HpySP506ORF1240P (83% identity) | CCGG | Hpy5006ORF980P |
| 990 | 0 aa hypothetical protein | |||
| 990 | 0 aa hypothetical protein | |||
| 995 | M | M.HpyU303XII (98% identity) | TCGA | M.Hpy5006ORF995P |
| 1000 | exodeoxyribonuclease VII large subunit | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7660 | response regulator | |||
| 7665 | M | M.HpyID6ORF6440P (93% identity) | M.Hpy5006ORF7665P | |
| 7670 | R | HpyBR5ORF7505P (96% identity) | Hpy5006ORF7665P | |
| 7675 | rod shape-determining protein MreC | |||
| 7730 | endonuclease | |||
| 7735 | M | M.HpyPE103ORF6840P (96% identity) | M.Hpy5006ORF7735P | |
| 7740 | R | HpyU305ORF6700P (89% identity) | Hpy5006ORF7735P | |
| 7745 | biotin synthase BioB | |||
| 3565 | ATP-dependent DNA helicase RecG | |||
| 3570 | M | M.HpyGH3ORF6475P (96% identity) | M.Hpy5006ORF3570P | |
| 3575 | R | Hpy5005ORF4805P (96% identity) | Hpy5006ORF3570P | |
| 3580 | restriction endonuclease | |||