Ralstonia solanacearum CQPS-1 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Ralstonia solanacearum CQPS-1 RM systems
Ref: Liu,Y. et al. Front Microbiol 8, 974 (2017)
REBASE ref # 24897
| Sequence length: | GenBank #: | |
| Chromosome: | 3,832,354 bp | CP016914 |
| plasmid unnamed: | 2,061,090 bp | CP016915 |
REBASE acronym: RsoCQPS1
Org_num: 25332
All begin BC350_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7020 | metal-dependent hydrolase | |||
| 7025 | R | Rso204ORF17770P (100% identity) | RsoCQPS1ORF7035P | |
| ??? | S | S.Rso204ORF17770P (100% identity) | S.RsoCQPS1ORF7035P | |
| 7035 | M | M.Rso204ORF17770P (100% identity) | M.RsoCQPS1ORF7035P | |
| 7040 | 96 aa hypothetical protein | |||
| 7150 | Rrf2 family transcriptional regulator | |||
| 7155 | M | M.RsoX05ORF971P (100% identity) | M.RsoCQPS1ORF7155P | |
| ??? | R | Rso204ORF17635P (100% identity) | RsoCQPS1ORF7155P | |
| 7170 | histidine kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2240 | 1367 aa hypothetical protein | |||
| ??? | M | M.RsoWR1ORFFP (100% identity) | M.RsoCQPS1ORFAP | |
| 2250 | transposase | |||
| 2400 | recombinase | |||
| ??? | M | M.RsoY45ORFCP (100% identity) | M.RsoCQPS1ORFBP | |
| 2410 | DNA-binding protein | |||
| 2525 | 121 aa hypothetical protein | |||
| 2530 | M | M2.Rso3755ORF1135P (76% identity) | M1.RsoCQPS1ORF2530P | |
| 2535 | M | M1.Rso3755ORF1135P (100% identity) | M2.RsoCQPS1ORF2530P | |
| 2540 | 135 aa hypothetical protein | |||
| 7895 | 271 aa hypothetical protein | |||
| 7900 | M | M.Rso204ORF16880P (95% identity) | M.RsoCQPS1ORF7900P | |
| 7905 | R | Rso232ORF1890005P (100% identity) | RsoCQPS1ORF7900P | |
| 7910 | 157 aa hypothetical protein | |||
| 8575 | phage tail protein | |||
| 8580 | M | M.RsoHA41ORFEP (97% identity) | M.RsoCQPS1ORF8580P | |
| 8585 | 139 aa hypothetical protein | |||
| 12195 | 118 aa hypothetical protein | |||
| 12200 | M | M.Rso204ORF12625P (100% identity) | M.RsoCQPS1ORF12200P | |
| 12205 | 111 aa hypothetical protein | |||
| 14180 | tryptophan synthase subunit beta | |||
| 14185 | M | M.Rsp650ORF7450P (100% identity) | M.RsoCQPS1ORFEP | |
| 14190 | tryptophan synthase subunit alpha | |||
| plasmid unnamed | ||||
| 17615 | 1367 aa hypothetical protein | |||
| ??? | M | M.RsoWR1ORFFP (100% identity) | M.RsoCQPS1ORFDP | |
| 17625 | 173 aa hypothetical protein | |||
| 17740 | 81 aa hypothetical protein | |||
| 17745 | M | M1.Rsp650ORF25990P (100% identity) | M1.RsoCQPS1ORF17745P | |
| 17750 | M | M2.Rsp650ORF25990P (100% identity) | M2.RsoCQPS1ORF17745P | |
| 17755 | transposase | |||
| 25265 | 62 aa hypothetical protein | |||
| 25270 | M | M.RsoWR1ORFAP (100% identity) | M.RsoCQPS1ORF25270P | |
| 25275 | 86 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7050 | integrase | |||
| 7055 | R | RsoWR1MrrP (92% identity) | RsoCQPS1MrrP | |
| 7060 | diguanylate cyclase | |||