Dehalococcoides mccartyi UCH-ATV1 |
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Putative Dehalococcoides mccartyi UCH-ATV1 RM systems
Ref: Yohda,M. et al. Sci Rep 7 (1), 2230 (2017)
REBASE ref # 24836
Complete sequence: 1,387,782 bp
GenBank #: AP017649
REBASE acronym: DmcATV1
Org_num: 25274
All begin DEHALATV1_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 628 | ABC transporter permease | |||
| 629 | S | S.AspCfxKORF850P (21% identity) | S.DmcATV1ORF630P | |
| 630 | M | SAM-dependent methyltransferase | M.DmcATV1ORF630P | |
| 631 | 66 aa hypothetical protein | |||
| 635 | 309 aa hypothetical protein | |||
| 636 | R | Cdi21302ORFNP (80% identity) | DmcATV1ORF638P | |
| 637 | S | S.Fna13121II (35% identity) | S.DmcATV1ORF638P | |
| 638 | M | M.CspWCF2I (83% identity) | M.DmcATV1ORF638P | |
| 639 | 79 aa hypothetical protein | |||
| 889 | HNH endonuclease | |||
| 890 | M | M1.Eca2594ORF21220P (86% identity) | M1.DmcATV1ORF890P | |
| 891 | M | M.Pxy22703ORF7570P (81% identity) | M2.DmcATV1ORF890P | |
| 892 | S | S1.EsiVORF5100P (43% identity) | S.DmcATV1ORF890P | |
| 893 | R | Eca2594ORF21220P (89% identity) | DmcATV1ORF890P | |
| 894 | DUF955 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 213 | 236 aa hypothetical protein | |||
| 214 | RM | Dmc2ORF1190P (100% identity) | DmcATV1ORF214P | |
| 215 | 90 aa hypothetical protein | |||
| 658 | methionine adenosyltransferase | |||
| 659 | M | M.DetORF66P (98% identity) | M.DmcATV1ORF659P | |
| 660 | virulence protein | |||
| 1260 | 263 aa hypothetical protein | |||
| 1261 | M | M.DspVSORF1303P (100% identity) | M.DmcATV1ORF1261P | |
| 1262 | R | DspVSORF1303P (100% identity) | DmcATV1ORF1261P | |
| 1263 | DEAD-like helicase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 844 | HEPN domain-containing protein | |||
| 845 | R | PspSCADCORF200415P (81% identity) | DmcATV1ORF848P | |
| 846 | 125 aa hypothetical protein | |||
| 847 | 67 aa hypothetical protein | |||
| 848 | M | M.NhoORF2210003P (64% identity) | M.DmcATV1ORF848P | |
| 849 | 258 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 631 | 66 aa hypothetical protein | |||
| 632 | R | CbaCHKC2McrCP (62% identity) | DmcATV1McrCP | |
| 633 | R | Rla82B1McrBP (62% identity) | DmcATV1McrBP | |
| 634 | helicase | |||