Salmonella enterica subsp. enterica serovar Typhimurium TW-Stm6 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium TW-Stm6 RM systems
Ref: Dyall-Smith,M. et al. unpublished
REBASE ref # 24875
| Sequence length: | GenBank #: | |
| Chromosome: | 4,999,862 bp | CP019649 |
| plasmid p275_TW-Stm6: | 275,801 bp | CP019647 |
REBASE acronym: Sen2401
Org_num: 23119
All begin B0X74_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 26705 | endoribonuclease SymE | |||
| 26710 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen2401ORF26715P |
| 26715 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen2401ORF26715P |
| 26720 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen2401ORF26715P |
| 26725 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12045 | inner membrane transporter YedA | |||
| 12050 | V | V.StyUK1DcmP (100% identity) | V.Sen2401DcmP | |
| 12055 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen2401DcmP |
| 12060 | phosphohydrolase | |||
| 12305 | RusA family endonuclease protein | |||
| 12310 | M | M.Ssp17155ORFIP (100% identity) | M.Sen2401ORF12310P | |
| 12315 | phage protein | |||
| 15780 | uncharacterized protein (Gifsy-1 phage) | |||
| 15785 | M | M.StyTORF1914P (100% identity) | M.Sen2401ORF15785P | |
| 15790 | Ead/Ea22-like protein (Gifsy-1 phage) | |||
| 16455 | endonuclease | |||
| ??? | M | M.StyCORF187P (49% identity) | M.Sen2401ORF16460P | |
| 16470 | IS6 family transposase | |||
| 19025 | phage replication protein A | |||
| 19030 | M | M.SensSZL38ORF19965P (100% identity) | M.Sen2401ORF19030P | |
| 19035 | DUF2732 domain phage protein | |||
| 19995 | Fis family transcriptional regulator | |||
| 20000 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen2401ORF20000P |
| 20005 | DUF2556 domain-containing protein | |||
| 20515 | ribulose-phosphate 3-epimerase | |||
| 20520 | M | DNA adenine methylase | GATC | M.Sen2401DamP |
| 20525 | cell division protein DamX | |||
| 24560 | phage protein | |||
| 24565 | M | M.SflLIN17ORF20615P (100% identity) | GATC | M.Sen2401ORF24565P |
| 24570 | LexA family transcriptional regulator | |||
| 26540 | AAA domain protein | |||
| 26545 | RM | StyUK1IV (100% identity) | GATCAG | Sen2401ORF26545P |
| 26550 | DNA repair protein | |||
| plasmid p275_TW-Stm6 | ||||
| 820 | uncharacterized protein | |||
| 825 | M | M.YpsF1ORFCP (100% identity) | M.Sen2401ORF825P | |
| 830 | YncB-like endonuclease (thermonuclease family) | |||
| 1295 | uncharacterized protein | |||
| 1300 | M | M.YpsF1ORFBP (100% identity) | M.Sen2401ORF1300P | |
| 1305 | uncharacterized protein | |||
| 1515 | DNA-binding plasmid partitioning | |||
| 1520 | M | M.SenBL10ORFDP (100% identity) | M2.Sen2401ORF1510P | |
| 1525 | uncharacterized protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3575 | sialic acid transporter | |||
| 3580 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen2401ORF3580P |
| 3585 | R | StyUK1IP (99% identity) | CAGAG | Sen2401ORF3580P |
| 3590 | cytochrome ubiquinol oxidase subunit I | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 26720 | type I restriction-modification system | |||
| 26725 | R | StyUK1MrrP (100% identity) | Sen2401MrrP | |
| 26730 | toxin ShpA of toxin-antitoxin (TA) system | |||