Escherichia coli H105 |
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Putative Escherichia coli H105 RM systems
Ref: Ghosh,H. et al. unpublished
REBASE ref # 24764
| Sequence length: | GenBank #: | |
| Chromosome: | 4,978,342 bp | CP021454 |
| plasmid pH105: | 134,899 bp | CP021871 |
REBASE acronym: EcoH105
Org_num: 24752
All begin CCL28_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19630 | 267 aa hypothetical protein | |||
| 19635 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoH105ORF19640P |
| 19640 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoH105ORF19640P |
| 19645 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoH105ORF19640P |
| 19650 | 52 aa hypothetical protein | |||
| 21500 | restriction endonuclease | |||
| 21505 | M | M.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | M.EcoH105ORF21505P |
| 21510 | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.EcoH105ORF21505P |
| 21515 | R | EcosS9ORF3165P (100% identity) | RTACNNNNGTG | EcoH105ORF21505P |
| 21520 | 112 aa hypothetical protein | |||
| plasmid pH105 | ||||
| 26480 | glycosyl transferase | |||
| 26485 | R | KpnKPH1ORF27575P (100% identity) | EcoH105ORF26495P | |
| 26490 | S | S.SenBR076ORFFP (100% identity) | S.EcoH105ORF26495P | |
| ??? | M | M.SenceORFJP (100% identity) | M.EcoH105ORF26495P | |
| 26500 | type II toxin-antitoxin system | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1800 | cell division protein DamX | |||
| 1805 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoH105DamP |
| 1810 | ribulose-phosphate 3-epimerase | |||
| 2440 | transporter | |||
| 2445 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoH105ORF2445P |
| 2450 | Fis family transcriptional regulator | |||
| 10020 | phosphohydrolase | |||
| 10025 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoH105DcmP |
| 10030 | V | V.SflC32DcmP (74% identity) | V.EcoH105DcmP | |
| 10035 | drug/metabolite exporter YedA | |||
| 13780 | 108 aa hypothetical protein | |||
| 13795 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoH105ORF13795P |
| 13800 | TrmB family transcriptional regulator | |||
| 16185 | transcriptional regulator | |||
| 16190 | M | M.KpnYN1ORFGP (89% identity) | M.EcoH105ORF16190P | |
| 16195 | 71 aa hypothetical protein | |||
| 21900 | restriction endonuclease | |||
| 21905 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoH105ORF21910P |
| 21910 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoH105ORF21910P |
| 21915 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M2.EcoH105ORF21910P |
| 21920 | 83 aa hypothetical protein | |||
| plasmid pH105 | ||||
| 26405 | 73 aa hypothetical protein | |||
| 26410 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoH105ORF26410P |
| 26415 | 0 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21890 | 60 aa hypothetical protein | |||
| 21895 | R | EcosS3McrBP (100% identity) | EcoH105McrBP | |
| 21900 | R | EcosS9McrCP (100% identity) | EcoH105McrCP | |
| 21905 | restriction endonuclease | |||