Ref: Rusniok,C. et al. Genome Biol. 10 (10), R110 (2009)

REBASE ref # 11373

Complete sequence: 2,277,550 bp

GenBank #: FM999788

REBASE acronym: Nme8013

Org_num: 5644

 

All begin NMV_

Type I
ORF Gene Most similar Specificity Name
 
1167 ATPase
1168 R Nme24705ORF8055P (97% identity) Nme8013ORF1170P
1169 S S.Nme53442ORF1140P (93% identity) S.Nme8013ORF1170P
1170 M M.NgoJH14ORFMP (97% identity) M.Nme8013ORF1170P
1171 bifunctional riboflavin biosynthesis protein
 
1206 133 aa hypothetical integral membrane protein
??? M M.NmeW135ORF2443P (98% identity) M.Nme8013ORF1208P
1212 uracil-DNA glycosylase (UDG)
Type II
ORF Gene Most similar Specificity Name
 
76 RNA-binding protein
??? M M1.NmeMC58ORF76P (100% identity) GGTGA M.Nme8013ORF78P
81 truncated adenine-specific methyltransferase
 
76 RNA-binding protein
??? M M.Nme8724ORFAP (100% identity) GGTGA M.Nme8013ORFAP
82 truncated UDP-glucose 4-epimerase (missing the
 
??? 5-methylcytosine methyltransferase
81 M M2.NmeMC58ORF76P (98% identity) GGTGA M.Nme8013ORF81P
82 truncated UDP-glucose 4-epimerase (missing the
 
316 truncated ISNme1 transposase (N-terminal 17% of
318 M M.NmeW135ORF222P (100% identity) CCTTC M.Nme8013ORF318P
319 R NmeW135ORF222P (99% identity) CCTTC Nme8013ORF318P
320 123 aa hypothetical protein
 
777 tellurite resistance protein TehA
782 M M.NmeS4ORFCP (100% identity) GCGCGC M.Nme8013ORF782P
??? R NmeS4ORFCP (100% identity) GCGCGC Nme8013ORF782P
785 alanyl-tRNA synthetase (alanine--tRNA ligase;
 
1575 ADP-L-glycero-D-manno-heptose-6-epimerase
1576 R NmeMBW2ORFHP (98% identity) Nme8013ORF1577P
1577 M M.NmeW135ORF855P (100% identity) CCAGA M.Nme8013ORF1577P
1578 D-beta-D-heptose 7-phosphate kinase
 
2080 membrane-associated peptidase
2082 R NmeBL915ORFAP (99% identity) GATC Nme8013ORF2082P
2083 leucyl-tRNA synthetase (leucine--tRNA ligase;
 
2206 truncated ATP-dependent DNA helicase HrpA
2207 R Nla10618ORF1929P (100% identity) GRCGYC Nme8013ORF2208P
2208 M M.Nla10618ORF1929P (99% identity) GRCGYC M.Nme8013ORF2208P
2209 truncated ATP-dependent DNA helicase HrpA
 
2209 truncated ATP-dependent DNA helicase HrpA
2210 V V.NmeS4ORFFP (100% identity) V.Nme8013ORF2212P
2211 R NmeS4ORFFP (99% identity) CCGG Nme8013ORF2212P
2212 M M.NmeS4ORFFP (100% identity) CCGG M.Nme8013ORF2212P
2213 truncated ISNme1 transposase (internal fragment
 
2286 cysteinyl-tRNA synthetase (cysteine--tRNA
2288 R Nme9714ORF2020P (100% identity) CCSGG Nme8013ORF2289P
2289 M M.Nme9714ORF2020P (100% identity) CCSGG M.Nme8013ORF2289P
2290 83 aa conserved hypothetical protein
Type III
ORF Gene Most similar Specificity Name
 
1020 L-lactate dehydrogenase (cytochrome)
1021 R Nme77IP (97% identity) Nme8013ORF1022P
??? M M.Nme53442ORF1287P (93% identity) M.Nme8013ORF1022P
1024 tRNA pseudouridine synthase B (tRNA
 
1136 peptidyl-prolyl cis-trans isomerase A (PPIase A;
??? M M.Nme25419ORF6995P (97% identity) M.Nme8013ORF1137P
1138 R Nme12163ORF892P (99% identity) Nme8013ORF1137P
1139 ATPase