Rhodopseudomonas palustris CGA009 |
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Putative Rhodopseudomonas palustris CGA009 RM systems
Ref: Larimer,F.W. et al. Nat. Biotechnol. 22 (1), 55-61 (2004)
REBASE ref # 7212
| Sequence length: | GenBank #: | |
| Chromosome: | 5,459,213 bp | BX571963 (NC_005296) |
| Chromosome: | 5,459,214 bp | CP116810 |
| plasmid pRPA: | 8,427 bp | BX571964 (NC_005297) |
| plasmid pRPA: | 8,427 bp | CP116811 |
REBASE acronym: Rpa
Org_num: 3320
All begin pRPA, RPA, TX73_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 348 | possible hydrolase | |||
| 349 | M | M.RpaTORF352P (100% identity) | CTCGAG | M.RpaIV |
| 350 | V | V.RpaTORF352P (100% identity) | CTCGAG | V.RpaIVP |
| 351 | 273 aa hypothetical protein | |||
| 1025 | possible Ectothiorhodospira Vacuolata | |||
| 1026 | M | M.Rpak7ORF5240P (100% identity) | GANTC | M.RpaIII |
| 1027 | 305 aa conserved hypothetical protein | |||
| 2219 | Possible ATPase | |||
| 2220 | M | M.Rpa2ORF11420P (100% identity) | GCCCGCC | M.RpaV |
| 2221 | 1099 aa conserved unknown protein | |||
| 3375 | 147 aa unknown protein | |||
| 3376 | RM | Rpa1980ORF3340P (100% identity) | GTYGGAG | RpaI |
| 3377 | 3-oxoacyl-acyl carrier protein reductase | |||
| Chromosome | ||||
| 1805 | alpha/beta hydrolase | |||
| 1810 | M | M.RpaTORF352P (100% identity) | CTCGAG | M.Rpa009ORF1810P |
| 1815 | V | V.RpaTORF352P (100% identity) | CTCGAG | V.Rpa009ORF1810P |
| 1820 | 273 aa hypothetical protein | |||
| 11455 | ATP-binding protein | |||
| 11460 | M | M.RpaV (100% identity) | GCCCGCC | M.Rpa009ORF11460P |
| 11465 | DUF499 domain-containing protein | |||
| 17455 | 95 aa hypothetical protein | |||
| 17460 | RM | Rpa2ORF17390P (100% identity) | GTYGGAG | Rpa009ORF17460P |
| 17465 | SDR family oxidoreductase | |||
| plasmid pRPA | ||||
| 2 | partition protein | |||
| 3 | R | Rpa2ORF25075P (100% identity) | CTGCAG | RpaIIP |
| 4 | M | M.Rpa2ORF25075P (100% identity) | CTGCAG | M.RpaII |
| 5 | resolvase | |||
| plasmid pRPA | ||||
| ??? | R | RpaIIP (100% identity) | CTGCAG | Rpa009ORFAP |
| ??? | M | M.RpaII (80% identity) | M.Rpa009ORFAP | |