Ref: Larimer,F.W. et al. Nat. Biotechnol. 22 (1), 55-61 (2004)

REBASE ref # 7212

Sequence length:GenBank #:
Chromosome: 5,459,213 bp BX571963 (NC_005296)
plasmid pRPA: 8,427 bp BX571964 (NC_005297)

REBASE acronym: Rpa

Org_num: 3320

 

All begin pRPA, RPA

Type II
ORF Gene Most similar Specificity Name
 
Chromosome
 
348 possible hydrolase
349 M M.RpaTORF352P (1% identity) CTCGAG M.RpaIV
350 V V.RpaTORF352P (1% identity) CTCGAG V.RpaIVP
351 273 aa hypothetical protein
 
1025 possible Ectothiorhodospira Vacuolata
1026 M M.RpaTORF1218P (1% identity) GANTC M.RpaIII
1027 305 aa conserved hypothetical protein
 
2219 Possible ATPase
2220 M M.Rpa1980ORF24410P (1% identity) GCCCGCC M.RpaV
2221 1099 aa conserved unknown protein
 
3375 147 aa unknown protein
3376 RM Rpa1980ORF3340P (1% identity) GTYGGAG RpaI
3377 3-oxoacyl-acyl carrier protein reductase
 
plasmid pRPA
 
2 partition protein
3 R Rpa1980ORF25850P (1% identity) CTGCAG RpaIIP
4 M M.Rpa1980ORF25850P (1% identity) CTGCAG M.RpaII
5 resolvase
Type IV
ORF Gene Most similar Specificity Name
 
Chromosome
 
1299 115 aa conserved hypothetical protein
1300 R Rpa1980MrrP (1% identity) RpaMrrP
1301 intracellular protease, PfpI family