Helicobacter pylori 52 |
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Putative Helicobacter pylori 52 RM systems
Ref: Kim,S. et al. unpublished
REBASE ref # 11333
Complete sequence: 1,568,826 bp
GenBank #: CP001680
REBASE acronym: Hpy52
Org_num: 5633
All begin HPKB_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 441 | polyphosphate kinase | |||
| 443 | S | S.HpyK024ORF2270P (99% identity) | S.Hpy52ORF444P | |
| 444 | M | M.Hpy52NORFSP (100% identity) | M.Hpy52ORF444P | |
| 446 | R | Hpy52NORFSP (100% identity) | Hpy52ORF444P | |
| 447 | 631 aa hypothetical protein | |||
| 496 | 228 aa hypothetical protein | |||
| 497 | M | M.Hpy52NORFTP (100% identity) | M.Hpy52ORF497P | |
| 498 | S | S.Hpy52NORFTP (100% identity) | S.Hpy52ORF497P | |
| 499 | R | Hpy52NORFTP (100% identity) | Hpy52ORF497P | |
| 500 | hydroxyethylthiazole kinase | |||
| 559 | cadmium-transporting ATPase | |||
| ??? | S | S.Hpy52NORFCP (99% identity) | S.Hpy52ORF560P | |
| 561 | 499 aa hypothetical protein | |||
| 1434 | FAD-dependent thymidylate synthase | |||
| 1435 | S | S.Hpy52NORFUP (100% identity) | S.Hpy52ORF1437P | |
| 1436 | 258 aa hypothetical protein | |||
| 1437 | M | M.Hpy52NORFUP (100% identity) | M.Hpy52ORF1437P | |
| 1438 | R | Hpy52NORFUP (100% identity) | Hpy52ORF1437P | |
| 1439 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 36 | rod shape-determining protein | |||
| ??? | R | type IIS restriction enzyme R protein | GAAGA | Hpy52ORFAP |
| 37 | transcriptional regulator | |||
| 47 | nicotinate-nucleotide pyrophosphorylase | |||
| 48 | RM | Hpy52NORFRP (95% identity) | Hpy52ORF48P | |
| 49 | adenine specific DNA methyltransferase (HINFIM) | |||
| 48 | 1168 aa hypothetical protein | |||
| 49 | M | M.Hpy52NORFGP (100% identity) | GANTC | M.Hpy52ORF49P |
| 50 | R | Hpy52NORFGP (100% identity) | GANTC | Hpy52ORF49P |
| 51 | carboxyl-terminal protease | |||
| 58 | 238 aa hypothetical protein | |||
| 59 | M | M1.Hpy52NORFAP (100% identity) | CCTC | M1.Hpy52ORF59P |
| 60 | M | M2.Hpy52NORFAP (100% identity) | CCTC | M2.Hpy52ORF59P |
| 61 | R | Hpy52NORFAP (97% identity) | CCTC | Hpy52ORF59P |
| 62 | sodium/proline symporter | |||
| 102 | malonylcoenzymeA-acyl carrier protein | |||
| 104 | R | Hpy52NORFOP (100% identity) | GATC | Hpy52ORF105P |
| 105 | M | M.Hpy52NORFOP (100% identity) | GATC | M.Hpy52ORF105P |
| 106 | pseudogene | |||
| 186 | Type II restriction-modification system | |||
| 187 | R | Hpy52NORFBP (100% identity) | Hpy52ORF187P | |
| 188 | sialic acid synthase | |||
| 269 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.Hpy52NORFEP (100% identity) | TCGA | M.Hpy52ORF270P |
| 272 | 204 aa hypothetical protein | |||
| 272 | 204 aa hypothetical protein | |||
| 273 | R | 163 aa hypothetical protein | CCGG | Hpy52ORF274P |
| 274 | M | M.Hpyfe97ORF6090P (100% identity) | CCGG | M.Hpy52ORF274P |
| 275 | ATP-dependent Clp protease, ATP-binding subunit | |||
| 358 | GTP-binding protein LepA | |||
| 359 | M | M.HpyK119ORF1820P (100% identity) | GCNGC | M.Hpy52ORF359P |
| 360 | 156 aa hypothetical protein | |||
| 458 | 338 aa hypothetical protein | |||
| 459 | M | M.Hpy52NORFYP (100% identity) | ATTAAT | M.Hpy52ORF459P |
| 460 | DD-heptosyltransferase | |||
| 461 | GTP-binding protein TypA | |||
| 462 | M | M.Hpy52NORFMP (100% identity) | ACNGT | M.Hpy52ORF462P |
| 464 | R | Hpy52NORFMP (100% identity) | ACNGT | Hpy52ORF462P |
| 465 | type II DNA modification enzyme | |||
| 464 | type II restriction endonuclease | |||
| 465 | M | M.Hpy52NORFHP (98% identity) | ACGT | M.Hpy52ORF465P |
| 466 | R | Hpy52NORFHP (100% identity) | ACGT | Hpy52ORF465P |
| 467 | catalase-like protein | |||
| 658 | large-conductance mechanosensitive channel | |||
| 659 | R | Hpy52NORFDP (100% identity) | CCNNGG | Hpy52ORF660P |
| 660 | M | M.Hpy52NORFDP (100% identity) | CCNNGG | M.Hpy52ORF660P |
| 661 | 3-5 exonuclease | |||
| 875 | pseudogene | |||
| 877 | R | Hpy52NORFFP (100% identity) | GTNNAC | Hpy52ORF878P |
| 878 | M | M.Hpy52NORFFP (98% identity) | GTNNAC | M.Hpy52ORF878P |
| 879 | ATP-dependent DNA helicase | |||
| 1013 | biotin carboxylase | |||
| ??? | M | M.Hpy52NORFJP (63% identity) | TCNNGA | M.Hpy52ORF1014P |
| 1016 | 199 aa hypothetical protein | |||
| 1050 | 144 aa hypothetical protein | |||
| 1051 | M | M.Hpy52NORFKP (98% identity) | GCGC | M.Hpy52ORF1051P |
| 1052 | FlgM protein | |||
| 1143 | 222 aa hypothetical protein | |||
| ??? | M | M.HpyLIM2I (87% identity) | CATG | M.Hpy52ORF1144P |
| 1145 | R | M.Hpy52ORF1144P (29% identity) | CATG | Hpy52ORF1144P |
| 1146 | serine acetyltransferase | |||
| 1372 | DNA polymerase I (polA) | |||
| 1373 | S | S.Hpyfe51ORF270P (79% identity) | S.Hpy52ORF1374P | |
| 1374 | M | M.HpyK119ORF6980P (100% identity) | GGNCC | M.Hpy52ORF1374P |
| 1375 | R | Hpyfe110ORF290P (100% identity) | GGNCC | Hpy52ORF1374P |
| 1376 | restriction enzyme BcgI alpha chain-like | |||
| 1375 | type II site-specific deoxyribonuclease | |||
| 1376 | RM | restriction enzyme BcgI alpha chain-like | Hpy52ORF1376P | |
| 1377 | 191 aa hypothetical protein | |||
| 1417 | transcription elongation factor NusA | |||
| 1418 | RM | Hpy52NORFQP (100% identity) | Hpy52ORF1418P | |
| 1419 | cytoplasmic protein | |||
| 1455 | 67 aa hypothetical protein | |||
| 1456 | M | M.HpySG07XI (100% identity) | TGCA | M.Hpy52ORF1456P |
| 1457 | R | Hpy52NORFNP (100% identity) | TGCA | Hpy52ORF1456P |
| 1458 | 103 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 528 | osmoprotection protein | |||
| ??? | M | M.Hpy52NORFVP (97% identity) | M.Hpy52ORF529P | |
| ??? | R | Hpy52NORFVP (100% identity) | Hpy52ORF529P | |
| 533 | 145 aa hypothetical protein | |||
| 1298 | 109 aa hypothetical protein | |||
| ??? | M | M.Hpy52NORFXP (99% identity) | M.Hpy52ORF1299P | |
| ??? | R | Hpy52NORFXP (100% identity) | Hpy52ORF1299P | |
| 1304 | biotin synthase | |||
| 1419 | cytoplasmic protein | |||
| ??? | R | Hpy52NORFWP (100% identity) | Hpy52ORF1422P | |
| ??? | M | M.Hpy52NORFWP (100% identity) | M.Hpy52ORF1422P | |
| 1424 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 185 | 101 aa hypothetical protein | |||
| 186 | R | R1.HpyK051ORF1005P (99% identity) | Hpy52McrBP | |
| 187 | 404 aa hypothetical protein | |||