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Putative Helicobacter pylori 51 RM systems
Ref: Kim,S. et al. unpublished
REBASE ref # 11333
Complete sequence: 1,589,954 bp
GenBank #: CP000012
REBASE acronym: Hpy51
Org_num: 1522
All begin KHP_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
425 | 36 aa hypothetical protein | |||
426 | S | S.Hpy51NORFB1P (100% identity) | S.Hpy51ORF427P | |
427 | M | M.Hpy51NORFB1P (100% identity) | M.Hpy51ORF427P | |
428 | R | Hpy51NORFB1P (100% identity) | Hpy51ORF427P | |
429 | 631 aa hypothetical protein | |||
479 | integral membrane protein | |||
480 | M | M.Hpy51NORFC1P (92% identity) | M.Hpy51ORF480P | |
481 | S | S.Hpy51NORFC1P (100% identity) | S.Hpy51ORF480P | |
482 | R | Hpy51NORFC1P (86% identity) | Hpy51ORF480P | |
483 | hyroxyethylthiazole kinase | |||
537 | cadmium-transporting ATPase | |||
538 | S | S.Hpyfe38ORF4705P (97% identity) | S.Hpy51ORF538P | |
539 | outer membrane protein HofF | |||
1384 | 208 aa hypothetical protein | |||
1385 | S | S.Hpy51NORFVP (98% identity) | S.Hpy51ORF1386P | |
1386 | M | M.Hpy51NORFVP (100% identity) | M.Hpy51ORF1386P | |
1387 | R | Hpy51NORFVP (100% identity) | Hpy51ORF1386P | |
1388 | 235 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
33 | type III restriction enzyme M protein | |||
34 | M | type IIS m4C methylase | GAAGA | M1.Hpy51ORF34P |
35 | M | M2.HpyAR8ORF205P (100% identity) | GAAGA | M2.Hpy51ORF34P |
36 | R | Hpy51NORFFP (100% identity) | GAAGA | Hpy51ORF34P |
37 | response regulator | |||
47 | quinolinate phosphoribosyl transferase | |||
48 | RM | Hpy51NORFUP (95% identity) | Hpy51ORF48P | |
49 | type II m6A methylase | |||
48 | Type IIG restriction-modification enzyme | |||
49 | M | M.Hpy51NORFIP (100% identity) | GANTC | M.Hpy51ORF49P |
??? | R | Hpy51NORFIP (100% identity) | GANTC | Hpy51ORF49P |
51 | carboxyl-terminal protease | |||
58 | integral membrane protein | |||
59 | M | M1.Hpy51NORFBP (100% identity) | CCTC | M1.Hpy51ORF59P |
60 | M | M2.HpyOK310ORFLP (100% identity) | CCTC | M2.Hpy51ORF59P |
61 | R | Hpy51NORFBP (93% identity) | CCTC | Hpy51ORF59P |
62 | adenine methyltransferase | |||
61 | 391 aa hypothetical protein | |||
62 | M | M.HpySG13XII (100% identity) | GTSAC | M.Hpy51I |
63 | R | Hpy51NORFKP (100% identity) | GTSAC | Hpy51I |
??? | 78 aa hypothetical protein | |||
94 | malonyl coenzyme A-acyl carrier protein | |||
??? | R | M.Hpy51NORFRP (50% identity) | GATC | Hpy51ORF96P |
??? | M | Hpy51ORF96P (15% identity) | GATC | M.Hpy51ORF96P |
97 | pseudogene | |||
175 | 5-methylcytosine-specific restriction enzyme B | |||
176 | R | Hpy51NORFDP (100% identity) | Hpy51ORF176P | |
177 | sialic acid synthase | |||
257 | large subunit of the single-stranded | |||
??? | M | M.HpyJ017IV (99% identity) | TCGA | M.Hpy51ORF258P |
259 | 204 aa hypothetical protein | |||
259 | 204 aa hypothetical protein | |||
260 | R | Hpy51NORFSP (100% identity) | CCGG | Hpy51ORF261P |
261 | M | M.Hpyfe97ORF6090P (100% identity) | CCGG | M.Hpy51ORF261P |
262 | ATP-dependent protease binding subunit/heat | |||
441 | outer membrane protein HopJ | |||
442 | M | M.Hpy51NORFA1P (100% identity) | ATTAAT | M.Hpy51ORF442P |
443 | type II restriction endonuclease | |||
444 | GTP-binding protein of the TypA subfamily | |||
445 | M | M.Hpy51NORFPP (100% identity) | ACNGT | M.Hpy51ORF445P |
446 | R | Hpyfe88ORF4775P (100% identity) | ACNGT | Hpy51ORF445P |
447 | type II m5C methylase | |||
446 | type II restriction endonuclease | |||
447 | M | M.Hpy51NORFJP (98% identity) | ACGT | M.Hpy51ORF447P |
448 | R | Hpy51NORFJP (80% identity) | ACGT | Hpy51ORF447P |
449 | catalase | |||
633 | 96 aa hypothetical protein | |||
634 | R | Hpyfe33ORF3810P (100% identity) | CCNNGG | Hpy51ORF635P |
635 | M | M.Hpyfe56ORF3730P (100% identity) | CCNNGG | M.Hpy51ORF635P |
636 | 276 aa hypothetical protein | |||
652 | outer membrane protein HorF | |||
??? | RM | Type IIG restriction-modification enzyme | Hpy51ORF653BP | |
??? | RM | 351 aa hypothetical protein | Hpy51ORF653AP | |
655 | anaerobic glycerol-3-phosphate dehydrogenase | |||
812 | outer membrane protein | |||
813 | R | Hpy51NORFLP (95% identity) | GTAC | Hpy51ORF814P |
814 | M | M.Hpy51NORFLP (99% identity) | GTAC | M.Hpy51ORF814P |
815 | DNA gyrase subunit B | |||
848 | flagellar hook protein | |||
849 | R | Hpy51NORFHP (100% identity) | GTNNAC | Hpy51ORF850P |
850 | M | M.Hpy51NORFHP (98% identity) | GTNNAC | M.Hpy51ORF850P |
851 | ATP-dependent single-stranded DNA helicase | |||
986 | biotin carboxylase | |||
987 | M | M.Hpyfe88ORF2055P (100% identity) | TCNNGA | M.Hpy51ORF987P |
988 | R | Hpy51NORFNP (100% identity) | TCNNGA | Hpy51ORF987P |
989 | 197 aa hypothetical protein | |||
1019 | 144 aa hypothetical protein | |||
1020 | M | M.HpyK042XV (99% identity) | GCGC | M.Hpy51ORF1020P |
1021 | temporal regulator of flagellar apparatus | |||
1072 | outer membrane protein HopQ | |||
1073 | M | M.Hpy51NORFAP (100% identity) | TCNGA | M.Hpy51ORF1073P |
1074 | R | Hpy51NORFAP (100% identity) | TCNGA | Hpy51ORF1073P |
1075 | purine-nucleoside phosphorylase | |||
1103 | 222 aa hypothetical protein | |||
1104 | M | M.Hpy51NORFMP (100% identity) | CATG | M.Hpy51ORF1104P |
??? | R | Hpy51NORFMP (100% identity) | CATG | Hpy51ORF1104AP |
1107 | serine acetyltransferase | |||
1321 | DNA polymerase I | |||
1322 | S | S.Hpy51NORFZP (99% identity) | S.Hpy51ORF1323P | |
1323 | RM | Hpy51NORFZP (78% identity) | Hpy51ORF1323P | |
1324 | 191 aa hypothetical protein | |||
1367 | 173 aa hypothetical protein | |||
??? | RM | Hpy51NORFTP (100% identity) | Hpy51ORF1368P | |
1369 | pseudogene | |||
1403 | 68 aa hypothetical protein | |||
??? | M | M.Hpy51NORFQP (100% identity) | TGCA | M.Hpy51ORF1404P |
1405 | R | HpyK042IIP (100% identity) | TGCA | Hpy51ORF1404P |
1406 | cytosine-methyltransferase | |||
1405 | 243 aa hypothetical protein | |||
1406 | M | M.HpyK117ORF7445P (100% identity) | M.Hpy51ORF1406P | |
1407 | translation elongation factor Ts | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
31 | rod shape-determining protein | |||
32 | R | Hpy51NORFWP (100% identity) | Hpy51ORF33P | |
33 | M | M.Hpy458ORFMP (78% identity) | M.Hpy51ORF33P | |
34 | type IIS m4C methylase | |||
1255 | citrate synthase | |||
1256 | M | M.Hpy51NORFXP (100% identity) | M.Hpy51ORF1256P | |
1257 | R | Hpy51NORFXP (91% identity) | Hpy51ORF1256P | |
1258 | biotin synthetase | |||
1370 | 356 aa hypothetical protein | |||
??? | R | type III restriction endonuclease | Hpy51ORF1374BP | |
1371 | IS607 transposase orfA | |||
1372 | IS607 transposase orfB | |||
1373 | R | Hpy51NORFYP (100% identity) | Hpy51ORF1374AP | |
1374 | M | M.HpyAR8ORF7260P (69% identity) | M.Hpy51ORF1374P | |
1375 | ATP-dependent DNA helicase | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
174 | translation elongation factor EF-P | |||
175 | R | R1.HpyK117ORF945P (100% identity) | Hpy51McrBP | |
176 | 404 aa hypothetical protein | |||
804 | ribosomal protein L9 | |||
805 | R | Hpy51NGmrSDP (100% identity) | Hpy51GmrSDP | |
806 | glutamine synthetase |