Sphingomonas species DC-6 |
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Putative Sphingomonas species DC-6 RM systems
Ref: Chen,Q. et al. Appl. Environ. Microbiol. 80 (16), 5078-5085 (2014)
REBASE ref # 24609
| Sequence length: | GenBank #: | |
| Chromosome: | 5,921,052 bp | CP021181 |
| plasmid pDC01: | 199,964 bp | CP021182 |
| plasmid pDC05: | 35,564 bp | CP021186 |
| plasmid pDC06: | 25,502 bp | CP021187 |
| plasmid pDC09: | 9,585 bp | CP021190 |
REBASE acronym: SspDC6
Org_num: 24429
All begin HY78_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 305 | peptidase S24 | |||
| 310 | M | M.SspSRS2ORF3240P (73% identity) | M.SspDC6ORF310P | |
| 315 | 446 aa hypothetical protein | |||
| 2360 | dihydropteroate synthase | |||
| 2365 | M | M.SwiRWORF4576P (100% identity) | M.SspDC6ORF2365P | |
| 2370 | 143 aa hypothetical protein | |||
| 8425 | LLM class flavin-dependent oxidoreductase | |||
| 8430 | M | M.SwiRWORF3353P (97% identity) | M.SspDC6ORF8430P | |
| 8435 | maleylacetoacetate isomerase | |||
| ??? | Uncharacterized protein | |||
| 8560 | M | M.SspC82ORFGP (97% identity) | M.SspDC6ORF8560P | |
| 8565 | 157 aa hypothetical protein | |||
| 9380 | glutamate synthase | |||
| ??? | M | M.SwiDP58ORFCP (100% identity) | M.SspDC6ORF9385P | |
| 9390 | LysR family transcriptional regulator | |||
| 18885 | 106 aa hypothetical protein | |||
| 18890 | M | M.SwiDP58ORFHP (59% identity) | M.SspDC6ORF18890P | |
| 18895 | 215 aa hypothetical protein | |||
| 25375 | 183 aa hypothetical protein | |||
| 25380 | RM | SspM15ORF36740P (39% identity) | SspDC6ORF25380AP | |
| 25385 | DDE transposase | |||
| ??? | RM | SinB90AORF16841P (30% identity) | SspDC6ORF25380BP | |
| 25395 | TIGR02687 family protein | |||
| plasmid pDC05 | ||||
| 30715 | 93 aa hypothetical protein | |||
| 30720 | RM | BveBr4ORFEP (91% identity) | SspDC6ORF30720P | |
| 30725 | site-specific DNA-methyltransferase | |||
| 30720 | 909 aa hypothetical protein | |||
| 30725 | M | M.BveBr4ORFEP (80% identity) | M.SspDC6ORF30725P | |
| 30550 | recombinase | |||
| plasmid pDC09 | ||||
| 31050 | 455 aa hypothetical protein | |||
| 31055 | M | M.SspTKSORF30175P (100% identity) | M.SspDC6ORF31055P | |
| 31060 | addiction module antidote protein, HigA family | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pDC01 | ||||
| 28525 | 876 aa hypothetical protein | |||
| 28530 | M | M.SumRL3ORF2815P (93% identity) | M.SspDC6ORF28530P | |
| 28535 | R | Sfu27551ORF23890P (99% identity) | SspDC6ORF28530P | |
| 28540 | 777 aa hypothetical protein | |||
| plasmid pDC06 | ||||
| 30795 | transcriptional regulator | |||
| 30800 | M | M.XspYN2ORF29745P (95% identity) | M.SspDC6ORF30800P | |
| 30805 | IS1380 family transposase | |||
| 30810 | haloacid dehalogenase, type II | |||
| 30815 | R | PspTRPORFCP (98% identity) | SspDC6ORF30800P | |
| 30820 | 249 aa hypothetical protein | |||