Campylobacter species NCTC 13003 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Campylobacter species NCTC 13003 RM systems
Ref: Miller,W.G. et al. Genome Biol Evol (2017) In press
REBASE ref # 24420
Complete sequence: 1,593,985 bp
GenBank #: CP018788
REBASE acronym: Csp13003
Org_num: 24384
All begin CIGN_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 76 | carbonic anhydrase alpha | |||
| 77 | M | M.Cla13003ORF77P (100% identity) | M.Csp13003ORF77P | |
| 78 | S | S.Cla13003ORF77P (100% identity) | S.Csp13003ORF77P | |
| 79 | virulence protein, RhuM family | |||
| 80 | R | Cla13003ORF77P (100% identity) | Csp13003ORF77P | |
| 81 | superoxide dismutase (Cu/Zn) | |||
| 245 | DUF541 domain protein | |||
| 246 | M | M.Cla13003I (100% identity) | M.Csp13003ORF246P | |
| 247 | S | S.Cla13003I (100% identity) | S.Csp13003ORF246P | |
| 248 | R | Cla13003IP (100% identity) | Csp13003ORF246P | |
| 251 | 148 aa hypothetical membrane protein (UPF0093 domain) | |||
| 826 | queuine tRNA-ribosyltransferase | |||
| 827 | S | S.Cla13003II (96% identity) | S.Csp13003ORF829P | |
| 828 | Fic domain protein | |||
| 829 | M | M.Cla13003II (100% identity) | M.Csp13003ORF829P | |
| 830 | R | Cla13003IIP (98% identity) | Csp13003ORF829P | |
| 831 | TrkA domain protein | |||
| 1033 | ammonium transporter | |||
| 1034 | M | M.Cla13003ORF1041P (100% identity) | M.Csp13003ORF1034P | |
| 1035 | S | S2.Cla13003ORF1041P (48% identity) | S.Csp13003ORF1034P | |
| 1037 | R | Cla13003ORF1041P (100% identity) | Csp13003ORF1034P | |
| 1039 | Na+/proline symporter | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 168 | zinc-dependent alcohol dehydrogenase | |||
| 169 | M | M.Cla13003ORF170P (100% identity) | M.Csp13003ORF169P | |
| 170 | DUF87 domain protein | |||
| 208 | 84 aa hypothetical protein | |||
| 209 | M | M.Cla13003V (100% identity) | M.Csp13003ORF209P | |
| 210 | R | Cla13003VP (100% identity) | Csp13003ORF209P | |
| 211 | pseudogene | |||
| 423 | phosphoribosylanthranilate isomerase | |||
| 424 | R | Cla13003IIIP (100% identity) | Csp13003ORF425P | |
| 425 | M | M.Cla13003III (100% identity) | M.Csp13003ORF425P | |
| 426 | anthranilate phosphoribosyltransferase / | |||
| 1270 | DNA polymerase III, alpha subunit | |||
| 1271 | M | M.Cla13003IV (100% identity) | M.Csp13003ORF1271P | |
| 1272 | 160 aa hypothetical protein | |||
| ??? | R | Cla13003IVP (100% identity) | Csp13003ORF1271P | |
| 1273 | transformation system, type II secretion system | |||
| 1289 | UDP-4-amino-4, | |||
| ??? | S | S.Cla13003ORF1299P (93% identity) | S.Csp13003ORF1292P | |
| 1292 | RM | Cla13003ORF1299P (100% identity) | Csp13003ORF1292P | |
| 1294 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate | |||