Lactococcus cremoris JM2 |
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Putative Lactococcus cremoris JM2 RM systems
Ref: Kelleher,P. et al. BMC Genomics 18 (1), 267 (2017)
REBASE ref # 24308
| Sequence length: | GenBank #: | |
| Chromosome: | 2,373,777 bp | CP015900 |
| plasmid pJM2C: | 38,979 bp | CP121078 |
| plasmid pJM2E: | 18,866 bp | CP121080 |
| plasmid pJM2H: | 4,159 bp | CP121081 |
REBASE acronym: LcrJM2
Org_num: 20807
All begin LLJM2_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pJM2C | ||||
| 4600 | 290 aa hypothetical protein | |||
| 4605 | R | Lra4877ORF4835P (99% identity) | LcrJM2ORF4610P | |
| 4610 | M | M.LcrJM2ORF5P (98% identity) | M.LcrJM2ORF4610P | |
| 4615 | IS982-like element ISLll1 family transposase | |||
| 4620 | S | S.Lla3901ORF16P (39% identity) | S.LcrJM2ORF4610P | |
| 4625 | 62 aa hypothetical protein | |||
| 4675 | RepB family plasmid replication initiator | |||
| 4680 | S | S.Lla223I (70% identity) | S.LcrJM2ORF4680P | |
| 4685 | 133 aa hypothetical protein | |||
| plasmid pJM2E | ||||
| 4895 | RepB family plasmid replication initiator | |||
| 4900 | S | S.Lcr029ORF13475P (52% identity) | S1.LcrJM2ORF4900P | |
| 4905 | S | S.Lra4877ORF11485P (50% identity) | S2.LcrJM2ORF4900P | |
| 4910 | IS6 family transposase | |||
| plasmid pJM2H | ||||
| ??? | S | S.LlaDRC3III (67% identity) | ACANNNNNNRTAA | S.LcrJM2V |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3700 | 516 aa conserved hypothetical protein | |||
| 2355 | R | LlaSD96ORF2151P (33% identity) | LcrJM2ORF2357BP | |
| 2356 | R | LlaSD96ORF2151P (66% identity) | LcrJM2ORF2357AP | |
| 2357 | M | M.LlaSD96ORF2151P (27% identity) | M.LcrJM2ORF2357BP | |
| 2358 | M | M.LlaSD96ORF2151P (47% identity) | M.LcrJM2ORF2357AP | |
| 2359 | 408 aa hypothetical protein | |||