Lactococcus lactis subsp. lactis UC11 |
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Putative Lactococcus lactis subsp. lactis UC11 RM systems
Ref: Kelleher,P. et al. BMC Genomics 18 (1), 267 (2017)
REBASE ref # 24308
| Sequence length: | GenBank #: | |
| Chromosome: | 2,381,789 bp | CP015904 |
| plasmid pCU11E: | 7,809 bp | CP034572 |
| plasmid pUC11B: | 49,356 bp | CP016721 |
REBASE acronym: LlaUC11
Org_num: 20819
All begin LLUC11_, LLUC11_pG
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1133 | hypothetical protein | |||
| 1134 | S | S2.LlaUC08II (96% identity) | CNACNNNNNNNTGG | S2.LlaUC11IIP |
| 1135 | tyrosine-type recombinase/integrase | |||
| 1136 | S | S1.LlaUC08IIP (100% identity) | S1.LlaUC11II | |
| 1137 | M | M.LlaUC08II (100% identity) | CNACNNNNNNNTGG | M.LlaUC11II |
| 1138 | R | LlaUC08IIP (100% identity) | CNACNNNNNNNTGG | LlaUC11IIP |
| 1139 | site-specific DNA-methyltransferase | |||
| plasmid pCU11E | ||||
| 2 | hypothetical protein | |||
| 3 | S | S.LlaUC08I (100% identity) | GGANNNNNNNTTCA | S.LlaUC11III |
| 4 | 90 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1138 | HsdR family type I site-specific | |||
| 1139 | M | M.LlaKF417ORF1059P (72% identity) | M.LlaUC11ORF1139P | |
| 1140 | 174 aa hypothetical protein | |||
| plasmid pUC11B | ||||
| 3505 | IS6-like element ISS1S family transposase | |||
| 3510 | R | LlaUC08ORF3840P (100% identity) | GCATC | LlaUC11IP |
| 3515 | M | M1.LlaUC08ORF3840P (100% identity) | GCATC | M1.LlaUC11I |
| 3520 | M | M2.LlaUC08ORF3840P (100% identity) | GCATC | M2.LlaUC11I |
| 3525 | conjugal transfer protein | |||