Cupriavidus necator NH9 |
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Putative Cupriavidus necator NH9 RM systems
Ref: Moriuchi,R. et al. unpublished
REBASE ref # 24218
| Sequence length: | GenBank #: | |
| chromosome 1: | 4,347,557 bp | CP017757 |
| chromosome 2: | 3,395,604 bp | CP017758 |
REBASE acronym: CneNH9
Org_num: 23495
All begin BJN34_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1270 | 298 aa hypothetical protein | |||
| 1275 | M | M.Jsp36ORF25135P (34% identity) | M.CneNH9ORF1275P | |
| 20 | S | S.TsuHLORF600P (19% identity) | S1.CneNH9ORF1275P | |
| 1280 | IS5 family transposase | |||
| 1285 | 120 aa hypothetical protein | |||
| 1290 | integrase | |||
| 1295 | integrase | |||
| 1300 | integrase | |||
| 1305 | IS5/IS1182 family transposase | |||
| 1310 | S | S.Ran24876ORF11215P (40% identity) | S2.CneNH9ORF1275P | |
| 1315 | R | Bcet4ORF17510P (24% identity) | CneNH9ORF1275AP | |
| 1320 | IS630 family transposase | |||
| 1325 | 99 aa hypothetical protein | |||
| 1330 | R | MspEFPC2ORF4795P (16% identity) | CneNH9ORF1275BP | |
| 1335 | 106 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 70 | IS5 family transposase | |||
| 75 | RM | Pho17164ORF725P (65% identity) | CneNH9ORF75P | |
| 80 | helicase SNF2 | |||
| 5010 | 124 aa hypothetical protein | |||
| 5015 | R | CpaUM1ORF20800P (77% identity) | CneNH9ORF5040P | |
| 5020 | 86 aa hypothetical protein | |||
| 5025 | transposase | |||
| 5030 | transposase | |||
| 5035 | transposase | |||
| 5040 | M | M.CpaUM1ORF20800P (59% identity) | M.CneNH9ORF5040P | |
| 5050 | glycine zipper 2TM domain-containing protein | |||
| 12980 | 158 aa hypothetical protein | |||
| 12985 | M | M.CspBIC8FORFAP (82% identity) | M.CneNH9ORF12985P | |
| 12995 | 151 aa hypothetical protein | |||
| 13995 | tryptophan synthase subunit alpha | |||
| 14000 | M | M.RspGA33ORF29085P (97% identity) | GTWWAC | M.CneNH9ORF14000P |
| 14005 | tryptophan synthase subunit beta | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1980 | 65 aa hypothetical protein | |||
| 1985 | M | M.BpyHSR5ORF2140P (67% identity) | M.CneNH9ORF1985P | |
| 1990 | R | BpyHSR5ORF2140P (58% identity) | CneNH9ORF1985P | |
| 1995 | 468 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 235 | nucleotide pyrophosphohydrolase | |||
| 240 | R | CspIDOMrrP (68% identity) | CneNH9MrrP | |
| 245 | DUF2938 domain-containing protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 2 | ||||
| 22565 | 236 aa hypothetical protein | |||
| 22570 | M | M.SfoJG42ORFHP (24% identity) | M.CneNH9ORF22570P | |
| 22575 | transposase | |||