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Putative Helicobacter pylori SS1 RM systems
Ref: Draper,J.L. et al. MBio 8 (1) (2017)
REBASE ref # 24196
Complete sequence: 1,619,098 bp
GenBank #: CP009259
REBASE acronym: HpySS1D
Org_num: 23452
All begin HPYLSS1_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
421 | Polyphosphate kinase | |||
423 | S | S.Hpyoh1ORF4975P (100% identity) | S.HpySS1DORF424P | |
424 | M | M.Hpyoh1ORF4975P (100% identity) | M.HpySS1DORF424P | |
??? | R | Hpyoh1ORF4975P (100% identity) | HpySS1DORF424P | |
427 | 631 aa hypothetical protein | |||
483 | Modification methylase HaeIII | |||
484 | M | M.HpyPMSS1ORF484AP (100% identity) | M.HpySS1DORF484AP | |
485 | IS607 resolvase OrfA | |||
486 | IS607 transposase OrfB | |||
??? | M | M.HpyPMSS1ORF484BP (100% identity) | M.HpySS1DORF484BP | |
488 | S | S.Hpyoh1ORF5270P (100% identity) | S.HpySS1DORF484P | |
489 | R | Hpyoh1ORF5270P (100% identity) | HpySS1DORF484P | |
490 | Hydroxyethylthiazole kinase | |||
546 | 258 aa hypothetical protein | |||
547 | S | S.Hpyoh1ORF5590P (100% identity) | S.HpySS1DORF545P | |
548 | outer membrane protein | |||
1357 | 72 aa hypothetical protein | |||
1358 | S | S.Hpyoh1ORF1965P (100% identity) | S.HpySS1DORF1358P | |
1359 | Formyltetrahydrofolate deformylase | |||
1460 | Thymidylate synthase ThyX | |||
1461 | S | S.Hpyoh1ORF2485P (100% identity) | S.HpySS1DORFAP | |
1462 | M | M.Hpyoh1ORF2485P (100% identity) | M.HpySS1DORFAP | |
1463 | R | Hpyoh1ORF2485P (100% identity) | HpySS1DORFAP | |
1464 | 235 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
49 | Agmatine deiminase | |||
50 | M | M1.Hpyoh1ORF3110P (100% identity) | CCTC | M1.HpySS1DORF50P |
51 | M | M2.HpyPMSS1ORF50P (100% identity) | CCTC | M2.HpySS1DORF50P |
52 | Sodium/proline symporter | |||
85 | Malonyl CoA-acyl carrier protein transacylase | |||
87 | R | Hpyoh1ORF3300P (100% identity) | HpySS1DORF88P | |
88 | M | M.Hpyoh1ORF3300P (100% identity) | GATC | M.HpySS1DORF88P |
89 | Alpha-1,2-fucosyltransferase FutC | |||
248 | Exodeoxyribonuclease 7 large subunit | |||
249 | M | M.HpyPMSS1ORF249P (100% identity) | TCGA | M1.HpySS1DORF249P |
250 | 204 aa hypothetical protein | |||
251 | R | Hpyoh1ORF4130P (86% identity) | HpySS1DORF249P | |
252 | M | M.Hpyoh1ORF4130P (100% identity) | CCGG | M2.HpySS1DORF249P |
253 | Chaperone protein ClpB | |||
336 | Elongation factor 4 | |||
337 | M | M.Hpyoh1ORF4535P (100% identity) | M.HpySS1DORF337P | |
338 | Type II restriction enzyme, TauI prototype | |||
439 | pseudogene | |||
440 | M | M.Hpyoh1ORF5060P (100% identity) | ATTAAT | M.HpySS1DORF440P |
441 | Type II restriction enzyme | |||
442 | GTP-binding protein TypA/BipA | |||
443 | M | M.Hpyoh1ORF5075P (100% identity) | ACNGT | M.HpySS1DORF443P |
444 | R | Hpyoh1ORF5075P (100% identity) | HpySS1DORF443P | |
445 | BsuMI modification methylase subunit | |||
444 | Type II restriction enzyme, Tsp4CI prototype | |||
445 | M | M.Hpyoh1ORF5085P (100% identity) | M.HpySS1DORF445P | |
446 | R | Hpyoh1ORF5085P (100% identity) | HpySS1DORF445P | |
447 | Catalase-related peroxidase precursor | |||
481 | phosphatidylglycerophosphatase B | |||
??? | R | HpyPMSS1ORF483P (100% identity) | HpySS1DORF483P | |
483 | M | M.Hpyoh1ORF5265P (100% identity) | M.HpySS1DORF483P | |
484 | Uncharacterized protein | |||
648 | DNA helicase II | |||
649 | M | M.HpyPMSS1ORF649P (100% identity) | GTNNAC | M.HpySS1DORF649P |
650 | R | Hpyoh1ORF6110P (100% identity) | GTNNAC | HpySS1DORF649P |
651 | Flagellar hook protein FlgE | |||
1027 | 197 aa hypothetical protein | |||
1026 | R | Hpyoh1ORF6430P (100% identity) | TCNNGA | HpySS1DORF1025P |
1025 | M | M.Hpyoh1ORF6430P (100% identity) | TCNNGA | M.HpySS1DORF1025P |
1024 | Biotin carboxylase | |||
876 | outer membrane protein Omp14 | |||
875 | RM | Hpyoh1ORF7185P (51% identity) | HpySS1DORF875BP | |
874 | RM | HpyPMSS1ORF874AP (100% identity) | HpySS1DORF875AP | |
873 | Anaerobic glycerol-3-phosphate dehydrogenase | |||
697 | Peptidoglycan DD-endopeptidase and | |||
??? | R | HpyPMSS1ORF695P (100% identity) | HpySS1DORF695P | |
??? | M | M.HpyPMSS1ORF695P (100% identity) | GTAC | M.HpySS1DORF695P |
694 | DNA gyrase subunit B | |||
1063 | 144 aa hypothetical protein | |||
1064 | R | Hpyoh1ORF495P (100% identity) | HpySS1DORF1065P | |
1065 | M | M.Hpyoh1ORF495P (100% identity) | M.HpySS1DORF1065P | |
1066 | Anti-sigma-28 factor, FlgM | |||
1158 | Phosphoglycolate phosphatase | |||
1159 | M | M.HpyPMSS1ORF1159P (100% identity) | CATG | M.HpySS1DORF1159P |
1160 | IceA2 protein | |||
1298 | Carboxy-terminal processing protease CtpB | |||
1299 | R | Hpyoh1ORF1670P (100% identity) | GANTC | HpySS1DORF1300P |
1300 | M | M.Hpyoh1ORF1670P (100% identity) | GANTC | M.HpySS1DORF1300P |
1301 | N-6 DNA Methylase | |||
1300 | Modification methylase DpnIIB | |||
1301 | RM | Hpyoh1ORF1675P (95% identity) | HpySS1DORF1301P | |
1302 | nicotinate-nucleotide | |||
1396 | DNA polymerase I | |||
1397 | S | S.Hpyoh1ORF2165P (100% identity) | S.HpySS1DORF1398P | |
1398 | RM | Hpyoh1ORF2165P (100% identity) | HpySS1DORF1398P | |
1399 | 191 aa hypothetical protein | |||
1424 | permease YjgP/YjgQ family protein | |||
1425 | M | M1.Hpyoh1ORF2300P (100% identity) | CCATC | M1.HpySS1DORF1425P |
1426 | M | M2.Hpyoh1ORF2300P (100% identity) | CCATC | M2.HpySS1DORF1425P |
1427 | R | Hpyoh1ORF2300P (100% identity) | CCATC | HpySS1DORF1425P |
1428 | outer membrane protein | |||
1444 | 179 aa hypothetical protein | |||
1445 | RM | Hpyoh1ORF2400P (100% identity) | HpySS1DORF1445P | |
1446 | 714 aa hypothetical protein | |||
1479 | 67 aa hypothetical protein | |||
1480 | M | M.Hpyoh1ORF2575P (100% identity) | TGCA | M.HpySS1DORF1480P |
1481 | R | Hpyoh1ORF2575P (100% identity) | HpySS1DORF1480P | |
1482 | Cytochrome c | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
1312 | Two component response regulator CrdR | |||
1313 | M | M.HpyL011ORF6595P (92% identity) | M.HpySS1DORF1313P | |
1314 | R | Hpyoh1ORF1735P (100% identity) | HpySS1DORF1313P | |
1315 | rod shape-determining protein MreC | |||
1325 | DNA/RNA non-specific endonuclease | |||
1326 | M | M.Hpyoh1ORF1800P (100% identity) | M.HpySS1DORF1326P | |
1327 | R | HpyMSS1ORF130P (100% identity) | HpySS1DORF1326P | |
1328 | Biotin synthase | |||
1446 | 714 aa hypothetical protein | |||
1447 | R | Hpyoh1ORF2415P (100% identity) | HpySS1DORF1448P | |
??? | M | M.HpyGRE043ORF7300P (97% identity) | M.HpySS1DORF1448P | |
1450 | ATP-dependent DNA helicase RecG |