Helicobacter pylori PMSS1 |
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Putative Helicobacter pylori PMSS1 RM systems
Ref: Draper,J.L. et al. MBio 8 (1) (2017) In press
REBASE ref # 24196
Complete sequence: 1,618,480 bp
GenBank #: CP018823
REBASE acronym: HpyPMSS1
Org_num: 23389
All begin HPYLPMSS1_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 421 | Polyphosphate kinase | |||
| 423 | S | S.Hpyoh1ORF4975P (100% identity) | S.HpyPMSS1ORF424P | |
| 424 | M | M.Hpyoh1ORF4975P (100% identity) | M.HpyPMSS1ORF424P | |
| ??? | R | Hpyoh1ORF4975P (100% identity) | HpyPMSS1ORF424P | |
| 427 | 631 aa hypothetical protein | |||
| 483 | Modification methylase HaeIII | |||
| 484 | M | M.HpySS1DORF484AP (100% identity) | M.HpyPMSS1ORF484AP | |
| 485 | IS607 resolvase OrfA | |||
| 486 | IS607 transposase OrfB | |||
| ??? | M | M.HpySS1DORF484BP (100% identity) | M.HpyPMSS1ORF484BP | |
| 488 | S | S.Hpyoh1ORF5270P (100% identity) | S.HpyPMSS1ORF484P | |
| 489 | R | Hpyoh1ORF5270P (100% identity) | HpyPMSS1ORF484P | |
| 490 | Hydroxyethylthiazole kinase | |||
| 544 | Cadmium, zinc and cobalt-transporting ATPase | |||
| ??? | M | M.HpyU105ORF3825P (100% identity) | M.HpyPMSS1ORF545P | |
| 546 | 258 aa hypothetical protein | |||
| 547 | S | S.Hpyoh1ORF5590P (100% identity) | S.HpyPMSS1ORF545P | |
| 548 | outer membrane protein | |||
| 1357 | 72 aa hypothetical protein | |||
| 1358 | S | S.Hpyoh1ORF1965P (100% identity) | S.HpyPMSS1ORF1358P | |
| 1359 | Formyltetrahydrofolate deformylase | |||
| 1460 | Thymidylate synthase ThyX | |||
| 1461 | S | S.Hpyoh1ORF2485P (100% identity) | S.HpyPMSS1ORFAP | |
| 1462 | M | M.Hpyoh1ORF2485P (100% identity) | M.HpyPMSS1ORFAP | |
| 1463 | R | Hpyoh1ORF2485P (100% identity) | HpyPMSS1ORFAP | |
| 1464 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 49 | Agmatine deiminase | |||
| 50 | M | M1.Hpyoh1ORF3110P (100% identity) | CCTC | M1.HpyPMSS1ORF50P |
| 51 | M | M2.HpySS1DORF50P (100% identity) | CCTC | M2.HpyPMSS1ORF50P |
| 52 | Sodium/proline symporter | |||
| 85 | Malonyl CoA-acyl carrier protein transacylase | |||
| 87 | R | Hpyoh1ORF3300P (100% identity) | GATC | HpyPMSS1ORF88P |
| 88 | M | M.Hpyoh1ORF3300P (100% identity) | GATC | M.HpyPMSS1ORF88P |
| 89 | Alpha-1,2-fucosyltransferase FutC | |||
| 248 | Exodeoxyribonuclease 7 large subunit | |||
| 249 | M | M1.HpySS1DORF249P (100% identity) | TCGA | M.HpyPMSS1ORF249P |
| 250 | 204 aa hypothetical protein | |||
| 250 | 204 aa hypothetical protein | |||
| 251 | R | Hpyoh1ORF4130P (86% identity) | HpyPMSS1ORF252P | |
| 252 | M | M.Hpyoh1ORF4130P (100% identity) | CCGG | M.HpyPMSS1ORF252P |
| 253 | Chaperone protein ClpB | |||
| 336 | Elongation factor 4 | |||
| 337 | M | M.Hpyoh1ORF4535P (100% identity) | M.HpyPMSS1ORF337P | |
| 338 | Type II restriction enzyme, TauI prototype | |||
| 439 | outer membrane protein | |||
| 440 | M | M.Hpyoh1ORF5060P (100% identity) | ATTAAT | M.HpyPMSS1ORF440P |
| 441 | Type II restriction enzyme | |||
| 442 | GTP-binding protein TypA/BipA | |||
| 443 | M | M.Hpyoh1ORF5075P (100% identity) | ACNGT | M.HpyPMSS1ORF443P |
| 444 | R | Hpyoh1ORF5075P (100% identity) | HpyPMSS1ORF443P | |
| 445 | BsuMI modification methylase subunit | |||
| 444 | Type II restriction enzyme, Tsp4CI prototype | |||
| 445 | M | M.Hpyoh1ORF5085P (100% identity) | ACGT | M.HpyPMSS1ORF445P |
| 446 | R | Hpyoh1ORF5085P (100% identity) | HpyPMSS1ORF445P | |
| 447 | Catalase-related peroxidase precursor | |||
| 481 | phosphatidylglycerophosphatase B | |||
| ??? | R | HpySS1DORF483P (100% identity) | HpyPMSS1ORF483P | |
| 483 | M | M.Hpyoh1ORF5265P (100% identity) | M.HpyPMSS1ORF483P | |
| 484 | Uncharacterized protein | |||
| 648 | DNA helicase II | |||
| 649 | M | M.HpySS1DORF649P (100% identity) | GTNNAC | M.HpyPMSS1ORF649P |
| 650 | R | Hpyoh1ORF6110P (100% identity) | GTNNAC | HpyPMSS1ORF649P |
| 651 | Flagellar hook protein FlgE | |||
| 694 | DNA gyrase subunit B | |||
| ??? | M | M.HpySS1DORF695P (100% identity) | GTAC | M.HpyPMSS1ORF695P |
| ??? | R | HpySS1DORF695P (100% identity) | GTAC | HpyPMSS1ORF695P |
| 697 | Peptidoglycan DD-endopeptidase and | |||
| 873 | Anaerobic glycerol-3-phosphate dehydrogenase | |||
| 874 | RM | HpySS1DORF875AP (100% identity) | HpyPMSS1ORF874AP | |
| 875 | RM | Hpyoh1ORF7185P (51% identity) | HpyPMSS1ORF874BP | |
| 876 | outer membrane protein Omp14 | |||
| 1024 | Biotin carboxylase | |||
| 1025 | M | M.Hpyoh1ORF6430P (100% identity) | TCNNGA | M.HpyPMSS1ORF1025P |
| 1026 | R | Hpyoh1ORF6430P (100% identity) | TCNNGA | HpyPMSS1ORF1025P |
| 1027 | 197 aa hypothetical protein | |||
| 1063 | 144 aa hypothetical protein | |||
| 1064 | R | Hpyoh1ORF495P (100% identity) | HpyPMSS1ORF1065P | |
| 1065 | M | M.Hpyoh1ORF495P (100% identity) | M.HpyPMSS1ORF1065P | |
| 1066 | Anti-sigma-28 factor, FlgM | |||
| 1158 | Phosphoglycolate phosphatase | |||
| 1159 | M | M.HpySS1DORF1159P (100% identity) | CATG | M.HpyPMSS1ORF1159P |
| 1160 | IceA2 protein | |||
| 1298 | Carboxy-terminal processing protease CtpB | |||
| 1299 | R | Hpyoh1ORF1670P (100% identity) | GANTC | HpyPMSS1ORF1300P |
| 1300 | M | M.Hpyoh1ORF1670P (100% identity) | GANTC | M.HpyPMSS1ORF1300P |
| 1301 | N-6 DNA Methylase | |||
| 1300 | Modification methylase DpnIIB | |||
| 1301 | RM | Hpyoh1ORF1675P (100% identity) | HpyPMSS1ORF1301P | |
| 1302 | nicotinate-nucleotide | |||
| 1396 | DNA polymerase I | |||
| 1397 | S | S.Hpyoh1ORF2165P (100% identity) | S.HpyPMSS1ORF1398P | |
| 1398 | RM | Hpyoh1ORF2165P (100% identity) | HpyPMSS1ORF1398P | |
| 1399 | 191 aa hypothetical protein | |||
| 1424 | permease YjgP/YjgQ family protein | |||
| 1425 | M | M1.Hpyoh1ORF2300P (100% identity) | CCATC | M1.HpyPMSS1ORF1425P |
| 1426 | M | M2.Hpyoh1ORF2300P (100% identity) | CCATC | M2.HpyPMSS1ORF1425P |
| 1427 | R | Hpyoh1ORF2300P (100% identity) | CCATC | HpyPMSS1ORF1425P |
| 1428 | outer membrane protein | |||
| 1444 | 179 aa hypothetical protein | |||
| 1445 | RM | Hpyoh1ORF2400P (100% identity) | HpyPMSS1ORF1445P | |
| 1446 | 714 aa hypothetical protein | |||
| 1479 | 67 aa hypothetical protein | |||
| 1480 | M | M.Hpyoh1ORF2575P (100% identity) | TGCA | M.HpyPMSS1ORF1480P |
| 1481 | R | Hpyoh1ORF2575P (100% identity) | HpyPMSS1ORF1480P | |
| 1482 | Cytochrome c | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1312 | Two component response regulator CrdR | |||
| 1313 | M | M.Hpyoh1ORF1735P (100% identity) | M.HpyPMSS1ORF1313P | |
| 1314 | R | Hpyoh1ORF1735P (100% identity) | HpyPMSS1ORF1313P | |
| 1315 | rod shape-determining protein MreC | |||
| 1325 | DNA/RNA non-specific endonuclease | |||
| 1326 | M | M.Hpyoh1ORF1800P (100% identity) | M.HpyPMSS1ORF1326P | |
| ??? | R | HpyNCIPMORFXP (100% identity) | HpyPMSS1ORF1326P | |
| 1328 | Biotin synthase | |||
| 1446 | 714 aa hypothetical protein | |||
| 1447 | R | Hpyoh1ORF2415P (100% identity) | HpyPMSS1ORF1448P | |
| ??? | M | M.Hpyoh1ORF2415P (100% identity) | M.HpyPMSS1ORF1448P | |
| 1450 | ATP-dependent DNA helicase RecG | |||