Helicobacter pylori MKF8 |
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Putative Helicobacter pylori MKF8 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,592,987 bp
GenBank #: AP017358
REBASE acronym: HpyMKF8
Org_num: 22627
All begin HPMKF8_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 475 | polyphosphate kinase | |||
| 476 | S | S.Hpyfe120ORF4990P (99% identity) | S.HpyMKF8ORF477P | |
| 477 | M | M.Hpy154ORF2310P (96% identity) | M.HpyMKF8ORF477P | |
| ??? | R | Hpy78ORF479P (92% identity) | HpyMKF8ORF477P | |
| 479 | type I restriction enzyme R protein | |||
| 532 | integral membrane protein | |||
| ??? | M | M.HpyMKM5ORF529P (96% identity) | M.HpyMKF8ORF533P | |
| 535 | S | Restriction endonuclease subunit M | S1.HpyMKF8ORF533P | |
| 535 | specificity subunit S of type I | |||
| 536 | S | S1.HpyMKM6ORF849P (96% identity) | S2.HpyMKF8ORF533P | |
| 537 | R | HpyF75ORF525P (98% identity) | HpyMKF8ORF533P | |
| 538 | hydroxyethylthiazole kinase | |||
| 593 | cadmium-transporting ATPase, P-type | |||
| 594 | S | specificity subunit S of type I | S1.HpyMKF8ORF594P | |
| 595 | S | S2.HpyMKF8ORF533P (96% identity) | S2.HpyMKF8ORF594P | |
| 596 | outer membrane protein HofF | |||
| 1451 | FAD-dependent thymidylate synthase | |||
| 1452 | S | S.HpyJ002ORF7195P (91% identity) | S.HpyMKF8ORF1454P | |
| 1453 | uncharacterized protein | |||
| 1454 | M | M.HpyK023ORF7235P (78% identity) | M.HpyMKF8ORF1454P | |
| 1455 | type III DNA modification enzyme | |||
| ??? | hypothetical protein | |||
| 1456 | type III DNA modification methyltransferase | |||
| 1457 | ATP-dependent DNA helicase RecG | |||
| 1458 | R | type I restriction enzyme R protein | HpyMKF8ORF1454P | |
| 1459 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 48 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | HpyGU83AORFHP (90% identity) | HpyMKF8ORF49P | |
| 52 | adenine-specific DNA methyltransferase | |||
| ??? | hypothetical protein | |||
| 52 | M | M.Hpyfe64ORF7055P (100% identity) | GANTC | M.HpyMKF8ORF52P |
| 53 | R | Hpy1829AVP (99% identity) | GANTC | HpyMKF8ORF52P |
| 54 | adenine specific DNA methyltransferase | |||
| 62 | terC family integral membrane protein | |||
| 63 | M | M2.Hpyfe73ORF7060P (99% identity) | CCTC | M1.HpyMKF8ORF63P |
| 64 | M | M2.HpyF20JORF60P (100% identity) | CCTC | M2.HpyMKF8ORF63P |
| 65 | R | HpyF20JORF60P (99% identity) | CCTC | HpyMKF8ORF63P |
| 66 | adenine/cytosine DNA methyltransferase | |||
| 155 | alpha-1,2-fucosyltransferase | |||
| 156 | M | M.HpyK036VI (98% identity) | GATC | M.HpyMKF8ORF156P |
| ??? | R | HpyF232ORFMP (100% identity) | GATC | HpyMKF8ORF156P |
| 159 | malonyl coenzyme A-acyl carrier protein | |||
| ??? | hypothetical protein | |||
| 216 | R | R2.HpyJ019ORF990P (97% identity) | HpyMKF8ORF216P | |
| 217 | sialic acid synthase | |||
| 299 | exodeoxyribonuclease VII large subunit | |||
| 300 | R | Hpyfe92ORF6045P (95% identity) | CCGG | HpyMKF8ORF301P |
| 301 | M | M.HpyTW21III (99% identity) | CCGG | M.HpyMKF8ORF301P |
| 302 | ATP-dependent protease binding subunit | |||
| 493 | outer membrane protein HopK | |||
| 494 | M | M.Hpyfe39ORF4900P (98% identity) | ATTAAT | M.HpyMKF8ORF494P |
| 495 | type II adenine specific methyltransferase | |||
| 496 | GTP-binding protein TypA | |||
| 497 | M | M.HpySP207II (99% identity) | ACNGT | M.HpyMKF8ORF497P |
| 498 | R | Hpyfe33ORF4780P (100% identity) | ACNGT | HpyMKF8ORF497P |
| 499 | catalase-like protein | |||
| 697 | glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | HpyJ028ORF3560P (90% identity) | HpyMKF8ORF698P | |
| 703 | outer membrane protein | |||
| 871 | m23/M37 family peptidase | |||
| 872 | R | HpySP209ORF1980P (85% identity) | GTAC | HpyMKF8ORF873P |
| 873 | M | M.Hpy72ORF510P (99% identity) | GTAC | M.HpyMKF8ORF873P |
| 874 | DNA gyrase subunit B | |||
| 911 | flagellar hook protein FlgE | |||
| 912 | R | HpyF227ORFMP (99% identity) | GTNNAC | HpyMKF8ORF913P |
| 913 | M | M.HpyF20JORF354P (100% identity) | GTNNAC | M.HpyMKF8ORF913P |
| 914 | rep helicase, single-stranded DNA-dependent | |||
| 1044 | biotin carboxylase | |||
| 1045 | M | M.HpyJ016VI (99% identity) | TCNNGA | M.HpyMKF8ORF1045P |
| 1046 | R | Hpyfe37ORF2030P (99% identity) | TCNNGA | HpyMKF8ORF1045P |
| 1047 | laminin subunit alpha-2 precursor | |||
| 1077 | uncharacterized protein | |||
| 1078 | M | M.HpyK016XIV (98% identity) | GCGC | M.HpyMKF8ORF1078P |
| 1079 | temporal regulator of flagellar apparatus | |||
| 1163 | haloacid dehalogenase-like hydrolase | |||
| 1164 | M | M.HpyF221ORFRP (92% identity) | CATG | M.HpyMKF8ORF1164P |
| ??? | R | Hpy21ORF1158P (98% identity) | CATG | HpyMKF8ORF1164P |
| 1167 | serine acetyltransferase | |||
| 1331 | lipopolysaccharide 1,2-glucosyltransferase RfaJ | |||
| 1332 | M | M.HpyOK88ORFCP (100% identity) | GAATTC | M.HpyMKF8ORF1332P |
| 1333 | R | Hpy23ORF1309P (99% identity) | GAATTC | HpyMKF8ORF1332P |
| 1334 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 1386 | DNA polymerase I | |||
| 1387 | S | S2.HpyQ55ORFTP (90% identity) | S1.HpyMKF8ORF1388P | |
| 1387 | S | S.HpyJ009ORF7045P (47% identity) | S2.HpyMKF8ORF1388P | |
| 1388 | RM | HpyF226ORFWP (98% identity) | HpyMKF8ORF1388P | |
| 1389 | transformation associated protein | |||
| 1414 | permease; membrane protein | |||
| 1415 | M | M2.Hpyfe71ORF135P (100% identity) | CCATC | M1.HpyMKF8ORF1415P |
| 1416 | M | M2.HpyJA107IV (99% identity) | CCATC | M2.HpyMKF8ORF1415P |
| ??? | R | HpyOK316ORFGP (98% identity) | CCATC | HpyMKF8ORF1415P |
| 1419 | outer membrane protein | |||
| 1436 | uncharacterized protein | |||
| 1437 | RM | HpyH390rORF60P (59% identity) | HpyMKF8ORF1437P | |
| 1438 | type III restriction enzyme R protein | |||
| 1474 | predicted protein | |||
| ??? | M | M.HpyML3ORFHP (99% identity) | M.HpyMKF8ORF1475P | |
| ??? | R | Hpyfe99ORF7775P (98% identity) | HpyMKF8ORF1475P | |
| 1479 | uncharacterized protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 33 | rod shape-determining protein MreC | |||
| ??? | R | HpyOK88ORFNP (95% identity) | HpyMKF8ORF36P | |
| ??? | M | M.HpyCHN2XVI (98% identity) | M.HpyMKF8ORF36P | |
| 38 | transcriptional regulator | |||
| 1317 | endonuclease | |||
| 1318 | M | M.HpyGU83AORFWP (98% identity) | M.HpyMKF8ORF1318P | |
| 1319 | R | HpySG12XIVP (88% identity) | HpyMKF8ORF1318P | |
| 1320 | biotin synthase | |||
| 1437 | type IIS restriction enzyme R and M protein | |||
| 1438 | R | HpyJ019ORF7220P (97% identity) | HpyMKF8ORF1439P | |
| ??? | M | M.HpyMKF8ORF1455P (100% identity) | M.HpyMKF8ORF1439P | |
| 1441 | ATP-dependent DNA helicase RecG | |||
| 1454 | type I restriction enzyme M protein | |||
| ??? | M | M.HpyMKF8ORF1439P (100% identity) | M.HpyMKF8ORF1455P | |
| 1457 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 212 | uncharacterized protein | |||
| ??? | R | Hpy72McrBP (96% identity) | HpyMKF8McrBP | |
| 216 | type II restriction enzyme | |||