Helicobacter pylori F78 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori F78 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,644,960 bp
GenBank #: AP017352
REBASE acronym: Hpy78
Org_num: 22622
All begin HPF78_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 477 | polyphosphate kinase | |||
| 478 | S | S.Hpyfe120ORF4990P (99% identity) | S.Hpy78ORF479P | |
| 479 | M | M.HpyF216ORFNP (98% identity) | M.Hpy78ORF479P | |
| 480 | R | HpyMKF8ORF477P (92% identity) | Hpy78ORF479P | |
| 481 | uncharacterized protein | |||
| 535 | integral membrane protein | |||
| 536 | M | M.HpyMKM6ORF849P (97% identity) | M.Hpy78ORF536P | |
| 537 | S | S.HpyGE10ORF3915P (61% identity) | S.Hpy78ORF536P | |
| ??? | R | HpyJ012ORF4235P (97% identity) | Hpy78ORF536P | |
| 540 | hydroxyethylthiazole kinase | |||
| 598 | cadmium-transporting ATPase, P-type | |||
| 599 | S | S.Hpy78ORF536P (47% identity) | S.Hpy78ORF599P | |
| 600 | uncharacterized protein | |||
| 1504 | FAD-dependent thymidylate synthase | |||
| 1505 | S | S.HpyJ021XI (46% identity) | S1.Hpy78ORF1507P | |
| 1506 | S | S.HpyK032ORF370P (74% identity) | S2.Hpy78ORF1507P | |
| ??? | M | M.HpyP30ORFHP (98% identity) | M.Hpy78ORF1507P | |
| 1510 | R | Hpy67ORF1459P (99% identity) | Hpy78ORF1507P | |
| 1511 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | Hpyfe15ORF6800P (86% identity) | Hpy78ORF51P | |
| 52 | type IIG restriction-modification enzyme | |||
| 53 | adenine specific DNA methyltransferase | |||
| 54 | M | M.HpyOK306ORFPP (99% identity) | GANTC | M.Hpy78ORF54P |
| 55 | R | Hpyfe38ORF6935P (93% identity) | GANTC | Hpy78ORF54P |
| 56 | protease | |||
| 63 | terC family integral membrane protein | |||
| ??? | M | M.HpyN6ORFPP (83% identity) | CCTC | M1.Hpy78ORF64P |
| 65 | M | adenine-specific DNA methyltransferase | CCTC | M2.Hpy78ORF64P |
| 67 | sodium/proline symporter | |||
| 162 | alpha-1,2-fucosyltransferase | |||
| 163 | M | M.Hpyfe101ORF6450P (97% identity) | M.Hpy78ORF163P | |
| 164 | hrgA protein | |||
| 219 | elongation factor P | |||
| 220 | R | R1.Hpy55ORF207P (99% identity) | R1.Hpy78ORF220P | |
| 221 | R | R2.HpyTN2ORF2420P (99% identity) | R2.Hpy78ORF220P | |
| 222 | sialic acid synthase | |||
| 301 | exodeoxyribonuclease VII large subunit | |||
| 302 | M | M.HpyJP26II (99% identity) | TCGA | M.Hpy78ORF302P |
| 303 | uncharacterized protein | |||
| ??? | R | Hpy23ORF960P (99% identity) | CCGG | Hpy78ORF302P |
| 306 | adenine-specific DNA methyltransferase | |||
| ??? | hypothetical protein | |||
| 306 | M | M.HpyP90ORFAP (99% identity) | CCGG | M.Hpy78ORF306P |
| 307 | ATP-dependent protease binding subunit | |||
| 353 | polysaccharide deacetylase family protein | |||
| 354 | R | HpyGU62AORFOP (81% identity) | CTNAG | Hpy78ORF355P |
| ??? | M | M.HpyK110VI (99% identity) | CTNAG | M.Hpy78ORF355P |
| 357 | uncharacterized protein | |||
| 493 | outer membrane protein HopK | |||
| 494 | M | M.HpyF18KORF489P (99% identity) | ATTAAT | M.Hpy78ORF494P |
| 495 | type II adenine specific methyltransferase | |||
| 496 | GTP-binding protein TypA | |||
| 497 | M | M.HpyAs009II (99% identity) | ACNGT | M.Hpy78ORF497P |
| 498 | R | HpyPF57ORF2525P (99% identity) | ACNGT | Hpy78ORF497P |
| 499 | DNA cytosine methyltransferase | |||
| 498 | type II restriction endonuclease | |||
| 499 | M | M.HpyJSHR6ORF9340P (100% identity) | ACGT | M.Hpy78ORF499P |
| ??? | R | Hpyfe102ORF4925P (99% identity) | ACGT | Hpy78ORF499P |
| 502 | catalase-like protein | |||
| 719 | polysaccharide biosynthesis protein | |||
| 720 | R | HpyTN2ORF7450P (100% identity) | Hpy78ORF721P | |
| 721 | M | M.HpyTN2ORF7450P (100% identity) | M.Hpy78ORF721P | |
| 722 | polysaccharide biosynthesis protein | |||
| 738 | outer membrane protein | |||
| 739 | RM | HpyMKM1ORF684P (93% identity) | Hpy78ORF739P | |
| 740 | glycerol-3-phosphate dehydrogenase | |||
| 898 | m23/M37 family peptidase | |||
| 899 | R | HpyTW17VIIIP (97% identity) | GTAC | Hpy78ORF900P |
| 900 | M | M.HpyM5CORFYP (99% identity) | GTAC | M.Hpy78ORF900P |
| 901 | DNA gyrase subunit B | |||
| 940 | flagellar hook protein FlgE | |||
| 941 | R | HpyTW20IVP (97% identity) | GTNNAC | Hpy78ORF942P |
| 942 | M | M.HpyF228ORF9880P (98% identity) | GTNNAC | M.Hpy78ORF942P |
| 943 | rep helicase, single-stranded DNA-dependent | |||
| 1071 | biotin carboxylase | |||
| 1072 | M | M.Hpyfe92ORF2245P (100% identity) | TCNNGA | M.Hpy78ORF1072P |
| 1073 | R | HpyMA21XIVP (99% identity) | TCNNGA | Hpy78ORF1072P |
| 1074 | laminin subunit alpha-2 precursor | |||
| 1105 | uncharacterized protein | |||
| 1106 | M | M.HpyJSHR3ORF12760P (99% identity) | GCGC | M.Hpy78ORF1106P |
| 1107 | flgM protein | |||
| 1188 | haloacid dehalogenase-like hydrolase | |||
| 1189 | M | M.HpyF233ORFUP (99% identity) | CATG | M.Hpy78ORF1189P |
| ??? | R | HpyTW22IP (79% identity) | CATG | Hpy78ORF1189P |
| 1192 | serine O-acetyltransferase | |||
| 1438 | DNA polymerase I | |||
| 1439 | S | S.HpyOK34ORFEBP (98% identity) | S.Hpy78ORF1440P | |
| 1440 | RM | type II restriction modification enzyme | Hpy78ORF1440P | |
| 1441 | cytosine-specific methyltransferase | |||
| 1440 | type II restriction modification enzyme | |||
| 1441 | M | M.Hpy63ORF1377P (100% identity) | M.Hpy78ORF1441P | |
| 1442 | R | HpyJ016ORF7060P (100% identity) | Hpy78ORF1441P | |
| 1443 | restriction enzyme BcgI alpha chain-like | |||
| 1469 | permease; membrane protein | |||
| 1470 | M | M2.Hpyfe71ORF135P (100% identity) | CCATC | M1.Hpy78ORF1470P |
| 1471 | M | M2.HpyCHN2IV (99% identity) | CCATC | M2.Hpy78ORF1470P |
| 1472 | R | HpyF210ORF1451P (95% identity) | CCATC | Hpy78ORF1470P |
| 1473 | outer membrane protein HorK | |||
| 1487 | uncharacterized protein | |||
| ??? | RM | HpyK119ORF7200P (92% identity) | Hpy78ORF1488P | |
| 1490 | uncharacterized protein | |||
| 1527 | uncharacterized protein | |||
| 1528 | M | M.HpyML3ORFHP (98% identity) | TGCA | M.Hpy78ORF1528P |
| 1529 | R | Hpy30VIP (99% identity) | TGCA | Hpy78ORF1528P |
| 1530 | site-specific DNA-methyltransferase | |||
| 1529 | type II restriction enzyme | |||
| 1530 | M | M.Hpy30ORF1426P (99% identity) | M.Hpy78ORF1530P | |
| 1531 | uncharacterized protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 37 | rod shape-determining protein MreC | |||
| 38 | R | HpyJ028XIIIP (96% identity) | Hpy78ORF39P | |
| 39 | M | M.HpyF235ORFEP (97% identity) | M.Hpy78ORF39P | |
| 40 | transcriptional regulator | |||
| 1340 | endonuclease | |||
| 1341 | M | M.HpyJ028ORF6700P (98% identity) | M.Hpy78ORF1341P | |
| 1342 | R | HpyF225ORFA1P (88% identity) | Hpy78ORF1341P | |
| 1343 | biotin synthase | |||
| 1490 | uncharacterized protein | |||
| 1491 | R | Hpyfe113ORF2950P (97% identity) | Hpy78ORF1492P | |
| ??? | M | M.HpyBR12ORF7105P (96% identity) | M.Hpy78ORF1492P | |
| 1495 | ATP-dependent DNA helicase RecG | |||