Helicobacter pylori F75 |
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Putative Helicobacter pylori F75 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,627,132 bp
GenBank #: AP017351
REBASE acronym: HpyF75
Org_num: 22621
All begin HPF75_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 468 | polyphosphate kinase | |||
| 469 | S | S.HpyOK311ORFXP (56% identity) | S.HpyF75ORF470P | |
| 470 | M | M.HpyK024ORF2270P (97% identity) | M.HpyF75ORF470P | |
| 471 | R | HpyJ022ORF2295P (75% identity) | HpyF75ORF470P | |
| 471 | type I restriction enzyme R protein | |||
| 524 | integral membrane protein | |||
| ??? | M | M.Hpy67ORF523P (96% identity) | M.HpyF75ORF525P | |
| 527 | S | S.HpyP77ORFMP (98% identity) | S.HpyF75ORF525P | |
| 528 | R | HpyMKF8ORF533P (98% identity) | HpyF75ORF525P | |
| 529 | hydroxyethylthiazole kinase | |||
| 584 | cadmium-transporting ATPase, P-type | |||
| 585 | S | type I R-M system S protein | S1.HpyF75ORF585P | |
| 586 | S | type I restriction-modification methylase | S2.HpyF75ORF585P | |
| 587 | outer membrane protein HofF | |||
| 1463 | FAD-dependent thymidylate synthase | |||
| 1464 | S | S.HpyJA103ORF7120P (49% identity) | S.HpyF75ORF1464P | |
| 1465 | relaxase | |||
| 1505 | integrase/recombinase | |||
| ??? | S | S.HpyP82ORFPP (43% identity) | S.HpyF75ORF1508P | |
| 1507 | uncharacterized protein | |||
| 1508 | M | M.HpyP90ORFSP (97% identity) | M.HpyF75ORF1508P | |
| ??? | R | Hpy1829AORF14570P (97% identity) | HpyF75ORF1508P | |
| 1511 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | site-specific DNA-methyltransferase | |||
| 37 | M | M1.HpyK110VII (100% identity) | GAAGA | M1.HpyF75ORF37P |
| 38 | M | M1.Hpyfe88ORF6905P (99% identity) | GAAGA | M2.HpyF75ORF37P |
| 39 | R | HpyF20JORF35P (99% identity) | GAAGA | HpyF75ORF37P |
| 40 | transcriptional regulator | |||
| 50 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | Hpyfe89ORF7160P (92% identity) | HpyF75ORF51P | |
| 52 | adenine specific DNA methyltransferase | |||
| 52 | adenine specific DNA methyltransferase | |||
| 53 | M | M.Hpyfe64ORF7055P (99% identity) | GANTC | M.HpyF75ORF53P |
| 54 | R | Hpy1829AVP (95% identity) | GANTC | HpyF75ORF53P |
| 55 | protease | |||
| 62 | terC family integral membrane protein | |||
| 63 | M | M1.HpyTW18VII (99% identity) | CCTC | M1.HpyF75ORF63P |
| 64 | M | M1.HpyOK308ORFYP (98% identity) | CCTC | M2.HpyF75ORF63P |
| 65 | sodium/proline symporter | |||
| 152 | alpha-1,2-fucosyltransferase | |||
| 153 | M | M.Hpy192ORFDP (98% identity) | GATC | M.HpyF75ORF153P |
| 154 | R | HpyF227ORFVP (97% identity) | GATC | HpyF75ORF153P |
| 155 | tetratricopeptide TPR_2 repeat protein | |||
| 211 | type IV restriction-modification enzyme | |||
| 212 | R | R2.HpyJ016ORF5710P (99% identity) | HpyF75ORF212P | |
| 213 | sialic acid synthase | |||
| 294 | exodeoxyribonuclease VII large subunit | |||
| 295 | R | HpyTW10IIIP (97% identity) | CCGG | HpyF75ORF296P |
| 296 | M | M.HpyOK316ORFUP (99% identity) | CCGG | M.HpyF75ORF296P |
| 297 | ATP-dependent protease binding subunit | |||
| 344 | polysaccharide deacetylase family protein | |||
| 345 | R | Hpy23ORF910P (99% identity) | CTNAG | HpyF75ORF346P |
| 346 | M | M.HpyK101IX (99% identity) | CTNAG | M.HpyF75ORF346P |
| 347 | uncharacterized protein | |||
| 383 | GTP-binding protein LepA | |||
| 384 | M | M.Hpys8ORF5410P (100% identity) | M.HpyF75ORF384P | |
| 385 | uncharacterized protein | |||
| 486 | outer membrane protein HopK | |||
| 487 | M | M.HpyMKF10ORF520P (97% identity) | ATTAAT | M.HpyF75ORF487P |
| 488 | DD-heptosyltransferase | |||
| 489 | GTP-binding protein TypA | |||
| ??? | M | M.HpyTN2ORF5220P (99% identity) | ACNGT | M.HpyF75ORF490P |
| 492 | R | HpyOki112ORF2585P (88% identity) | ACNGT | HpyF75ORF490P |
| 493 | DNA cytosine methyltransferase | |||
| 492 | type II restriction endonuclease | |||
| 493 | M | M.HpyTW10ORF2370P (100% identity) | ACGT | M.HpyF75ORF493P |
| 494 | R | Hpy38ORF496P (100% identity) | ACGT | HpyF75ORF493P |
| 495 | catalase-like protein | |||
| 710 | uncharacterized protein | |||
| ??? | RM | HpyK110ORF3020P (91% identity) | HpyF75ORF711P | |
| 715 | glycerol-3-phosphate dehydrogenase | |||
| 878 | m23/M37 family peptidase | |||
| 879 | R | HpyMKM5ORF881P (99% identity) | GTAC | HpyF75ORF880P |
| 880 | M | M.Hpybs3ORFSP (98% identity) | GTAC | M.HpyF75ORF880P |
| 881 | DNA gyrase subunit B | |||
| 919 | flagellar hook protein FlgE | |||
| 920 | R | HpyOK318ORFDP (95% identity) | GTNNAC | HpyF75ORF921P |
| 921 | M | M.HpyF228ORF9880P (98% identity) | GTNNAC | M.HpyF75ORF921P |
| 922 | rep helicase, single-stranded DNA-dependent | |||
| 1057 | biotin carboxylase | |||
| 1058 | M | M.HpyP98ORFEP (100% identity) | TCNNGA | M.HpyF75ORF1058P |
| 1059 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | HpyF75ORF1058P |
| 1060 | laminin subunit alpha-2 precursor | |||
| 1091 | uncharacterized protein | |||
| 1092 | M | M.Hpy28ORF1083P (100% identity) | GCGC | M.HpyF75ORF1092P |
| 1093 | negative regulator of flagellin synthesis FlgM | |||
| 1177 | haloacid dehalogenase | |||
| 1178 | M | M.Hpys8ORF14020P (99% identity) | CATG | M.HpyF75ORF1178P |
| ??? | R | HpyOK305ORFDP (97% identity) | HpyF75ORF1178P | |
| 1181 | serine O-acetyltransferase | |||
| 1347 | lipopolysaccharide 1,2-glucosyltransferase RfaJ | |||
| 1348 | R | Hpy17ORF1316P (99% identity) | CGCG | HpyF75ORF1349P |
| 1349 | M | M.HpyMKM1ORF1324P (100% identity) | CGCG | M.HpyF75ORF1349P |
| 1350 | uncharacterized protein | |||
| 1404 | DNA polymerase I | |||
| 1405 | S | S.HpyJ012ORF6925P (59% identity) | S1.HpyF75ORF1408P | |
| 1406 | 61 aa hypothetical protein | |||
| 1407 | S | type IIS R-M system restriction enzyme | S2.HpyF75ORF1408P | |
| 1408 | RM | HpyJP26XV (99% identity) | HpyF75ORF1408P | |
| 1409 | hP1473-transformation associated protein | |||
| 1450 | uncharacterized protein | |||
| 1451 | RM | HpyK048XIV (94% identity) | HpyF75ORF1451P | |
| 1452 | type III restriction enzyme R protein | |||
| 1529 | uncharacterized protein | |||
| 1530 | M | M.HpyTW06IX (99% identity) | TGCA | M.HpyF75ORF1530P |
| 1531 | R | HpyMKF10ORF1493P (98% identity) | TGCA | HpyF75ORF1530P |
| 1532 | 63 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 33 | rod shape-determining protein MreC | |||
| 34 | R | HpyBG4ORF6890P (86% identity) | HpyF75ORF35P | |
| ??? | M | M.HpyK010XIV (96% identity) | M.HpyF75ORF35P | |
| 37 | type IIS restriction enzyme M2 protein | |||
| 1329 | type II citrate synthase | |||
| 1330 | M | M.HpyPF16ORF6530P (98% identity) | M.HpyF75ORF1330P | |
| 1331 | R | Hpy3401ORF1300P (96% identity) | HpyF75ORF1330P | |
| 1332 | biotin synthase | |||
| 1451 | type IIG restriction-modification enzyme | |||
| 1452 | R | HpyMKM1ORF1428P (98% identity) | HpyF75ORF1453P | |
| 1453 | M | M.HpyNY40ORF493P (96% identity) | M.HpyF75ORF1453P | |
| 1454 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 210 | uncharacterized protein | |||
| 211 | R | R1.HpyJA114ORF950P (99% identity) | HpyF75McrBP | |
| 212 | type II restriction enzyme | |||