Helicobacter pylori F72 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori F72 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,625,760 bp
GenBank #: AP017350
REBASE acronym: Hpy72
Org_num: 22620
All begin HPF72_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 466 | polyphosphate kinase | |||
| 467 | S | S.HpyTN2ORF5020P (98% identity) | S.Hpy72ORF468P | |
| ??? | M | M.HpyF211ORF459P (99% identity) | M.Hpy72ORF468P | |
| ??? | R | HpyK24ORF2475P (95% identity) | Hpy72ORF468P | |
| 472 | uncharacterized protein | |||
| 790 | outer membrane protein HofF | |||
| 791 | S | S.Hpy1601ORF2470P (95% identity) | S.Hpy72ORF791P | |
| 792 | type I restriction enzyme | |||
| 851 | hydroxyethylthiazole kinase | |||
| 852 | R | HpyP30ORFTP (97% identity) | Hpy72ORF855P | |
| 853 | S | S.HpyT009ORF3885P (93% identity) | S.Hpy72ORF855P | |
| 854 | type I restriction enzyme | |||
| 854 | pseudogene | |||
| 854 | type I restriction enzyme | |||
| 855 | M | M.HpyK26ORF4185P (97% identity) | M.Hpy72ORF855P | |
| 856 | type I restriction-modification | |||
| 1437 | FAD-dependent thymidylate synthase | |||
| 1438 | S | type I R-M system specificity subunit | S1.Hpy72ORF1442P | |
| 1439 | S | S.HpyF232ORFGP (91% identity) | S2.Hpy72ORF1442P | |
| 1440 | uncharacterized protein | |||
| 1441 | uncharacterized protein | |||
| ??? | M | M.HpyP89ORFIP (97% identity) | M.Hpy72ORF1442P | |
| 1444 | R | Hpy55ORF1503P (97% identity) | Hpy72ORF1442P | |
| 1445 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 44 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | HpyPE138ORF6770P (87% identity) | Hpy72ORF45P | |
| 48 | protease | |||
| 55 | terC family integral membrane protein | |||
| 56 | M | M1.HpyK28IV (98% identity) | CCTC | M1.Hpy72ORF56P |
| 57 | M | M2.HpyGU83AORFKP (100% identity) | CCTC | M2.Hpy72ORF56P |
| 58 | R | HpyGU83AORFKP (95% identity) | CCTC | Hpy72ORF56P |
| 59 | adenine methyltransferase | |||
| 58 | restriction endonuclease | |||
| 59 | M | M.Hpyfe79ORF7015P (99% identity) | GTSAC | M1.Hpy72ORF59P |
| ??? | R | HpyOK88ORFQP (88% identity) | Hpy72ORF59P | |
| 62 | adenine/cytosine DNA methyltransferase | |||
| 148 | alpha-1,2-fucosyltransferase | |||
| 149 | M | M.HpyF93ORFLP (98% identity) | GATC | M.Hpy72ORF149P |
| 150 | R | HpyK25ORF705P (97% identity) | GATC | Hpy72ORF149P |
| 151 | malonyl coenzyme A-acyl carrier protein | |||
| ??? | hypothetical protein | |||
| 212 | R | HpyMKF8ORF216P (96% identity) | Hpy72ORF212P | |
| 213 | sialic acid synthase | |||
| 292 | exodeoxyribonuclease VII large subunit | |||
| 293 | M | M.HpyJP26II (98% identity) | TCGA | M.Hpy72ORF293P |
| 294 | uncharacterized protein | |||
| 294 | uncharacterized protein | |||
| 295 | R | HpyMA20IIP (97% identity) | CCGG | Hpy72ORF296P |
| ??? | M | M.HpyM6CORFAP (99% identity) | CCGG | M.Hpy72ORF296P |
| 298 | ATP-dependent protease binding subunit | |||
| 344 | polysaccharide deacetylase family protein | |||
| 345 | R | HpyF93ORFNP (99% identity) | CTNAG | Hpy72ORF346P |
| 346 | M | M.HpyAR10V (100% identity) | CTNAG | M.Hpy72ORF346P |
| 347 | uncharacterized protein | |||
| 484 | outer membrane protein HopK | |||
| 485 | M | M.HpyMKF8ORF494P (99% identity) | ATTAAT | M.Hpy72ORF485P |
| 486 | DD-heptosyltransferase | |||
| 487 | GTP-binding protein TypA | |||
| 488 | M | M.HpyV002II (100% identity) | ACNGT | M.Hpy72ORF488P |
| 489 | R | Hpyfe93ORF4895P (99% identity) | ACNGT | Hpy72ORF488P |
| 490 | DNA cytosine methyltransferase | |||
| 489 | type II restriction endonuclease | |||
| 490 | M | M.Hpyfe106ORF4905P (99% identity) | ACGT | M.Hpy72ORF490P |
| 491 | R | Hpyfe126ORF4870P (99% identity) | ACGT | Hpy72ORF490P |
| 492 | catalase-like protein | |||
| 509 | DNA gyrase subunit B | |||
| 510 | M | M.HpyF228ORFMP (99% identity) | GTAC | M.Hpy72ORF510P |
| 511 | R | HpyM6CORFNP (100% identity) | GTAC | Hpy72ORF510P |
| 512 | m23/M37 family peptidase | |||
| 684 | outer membrane protein HorF | |||
| 685 | RM | type IIG restriction-modification enzyme | Hpy72ORF685CP | |
| 686 | RM | HpyK005ORF3505P (47% identity) | Hpy72ORF685BP | |
| 687 | RM | HpyCHN7ORF3400P (22% identity) | Hpy72ORF685AP | |
| 688 | glycerol-3-phosphate dehydrogenase | |||
| 907 | flagellar hook protein FlgE | |||
| 908 | R | HpyID5VIIIP (94% identity) | Hpy72ORF909P | |
| 909 | M | M.HpyTW16XI (98% identity) | GTNNAC | M.Hpy72ORF909P |
| 910 | rep helicase, single-stranded DNA-dependent | |||
| 1039 | biotin carboxylase | |||
| 1040 | M | M.HpyK93ORF2085P (99% identity) | TCNNGA | M.Hpy72ORF1040P |
| 1041 | R | HpyF219ORFJP (99% identity) | TCNNGA | Hpy72ORF1040P |
| 1042 | laminin subunit alpha-2 precursor | |||
| 1072 | uncharacterized protein | |||
| 1073 | M | M.HpyMKM6ORF1067P (99% identity) | GCGC | M.Hpy72ORF1073P |
| 1074 | flgM protein | |||
| 1157 | haloacid dehalogenase-like hydrolase | |||
| 1158 | M | M.HpyTN2ORF1370P (98% identity) | CATG | M.Hpy72ORF1158P |
| ??? | R | Hpyfe97ORF1435P (94% identity) | CATG | Hpy72ORF1158P |
| 1161 | serine acetyltransferase | |||
| 1321 | lipopolysaccharide 1,2-glucosyltransferase RfaJ | |||
| 1322 | M | M.HpyOK88ORFCP (99% identity) | GAATTC | M.Hpy72ORF1322P |
| 1323 | R | Hpy23ORF1309P (99% identity) | GAATTC | Hpy72ORF1322P |
| 1324 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 1375 | DNA polymerase I | |||
| 1376 | S | S.HpyJA107ORF6925P (54% identity) | S.Hpy72ORF1377P | |
| 1377 | RM | Hpy39ORFTP (75% identity) | Hpy72ORF1377P | |
| 1378 | hP1473-transformation associated protein | |||
| 1403 | permease; membrane protein | |||
| 1404 | M | M2.Hpyfe71ORF135P (100% identity) | CCATC | M1.Hpy72ORF1404P |
| 1405 | M | M2.HpyMA22III (100% identity) | CCATC | M2.Hpy72ORF1404P |
| 1406 | R | Hpy83ORF1482P (99% identity) | CCATC | Hpy72ORF1404P |
| 1407 | outer membrane protein | |||
| 1423 | uncharacterized protein | |||
| 1424 | RM | HpyOK310ORFEP (90% identity) | Hpy72ORF1424P | |
| 1425 | type III restriction enzyme R protein | |||
| 1498 | uncharacterized protein | |||
| 1499 | M | M.HpyTW01III (98% identity) | TGCA | M.Hpy72ORF1499P |
| ??? | R | HpyTW24VIIP (98% identity) | TGCA | Hpy72ORF1499P |
| 1502 | site-specific DNA-methyltransferase | |||
| ??? | hypothetical protein | |||
| 1502 | M | M.HpyK008ORF7360P (99% identity) | M.Hpy72ORF1502P | |
| 1503 | uncharacterized protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1308 | endonuclease | |||
| 1309 | M | M.HpyGU83AORFWP (98% identity) | M.Hpy72ORF1309P | |
| 1310 | R | HpyK101ORF6705P (94% identity) | Hpy72ORF1309P | |
| 1311 | biotin synthase | |||
| 1424 | type IIG restriction-modification enzyme | |||
| 1425 | R | Hpyfe125ORF40P (97% identity) | Hpy72ORF1426P | |
| ??? | M | M.HpyF209ORF1429P (96% identity) | M.Hpy72ORF1426P | |
| 1428 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 209 | uncharacterized protein | |||
| ??? | R | R1.HpyJ016ORF5710P (64% identity) | Hpy72McrBP | |
| 212 | type II restriction enzyme | |||