Helicobacter pylori F63 |
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Putative Helicobacter pylori F63 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,588,584 bp
GenBank #: AP017346
REBASE acronym: Hpy63
Org_num: 22617
All begin HPF63_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 465 | polyphosphate kinase | |||
| 466 | S | S.HpyHP94VI (99% identity) | S.Hpy63ORF467P | |
| 467 | M | M.HpyPF57III (97% identity) | M.Hpy63ORF467P | |
| 468 | R | Hpy21ORF798P (79% identity) | Hpy63ORF467BP | |
| 468 | R | type I restriction enzyme R protein | Hpy63ORF467AP | |
| 469 | uncharacterized protein | |||
| 521 | integral membrane protein | |||
| 522 | M | M.HpyJA105ORF3495P (96% identity) | M.Hpy63ORF522P | |
| 523 | S | S.Hpy90ORF872P (98% identity) | S.Hpy63ORF522P | |
| 524 | R | HpyF225ORFTP (97% identity) | Hpy63ORF522P | |
| 525 | hydroxyethylthiazole kinase | |||
| 580 | cadmium-transporting ATPase, P-type | |||
| 581 | S | S.HpyF234ORFLP (98% identity) | S.Hpy63ORF581P | |
| 582 | hof-family outer membrane protein | |||
| 1442 | FAD-dependent thymidylate synthase | |||
| 1443 | S | S.HpyTW22ORF7085P (90% identity) | S.Hpy63ORF1444P | |
| ??? | M | M.HpyOK303ORFHP (98% identity) | M.Hpy63ORF1444P | |
| 1446 | R | HpyMKF3ORF1462P (97% identity) | Hpy63ORF1444P | |
| 1447 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 34 | adenine-specific DNA methylase | |||
| ??? | M | M2.Hpyfe78ORF7125P (95% identity) | GAAGA | M1.Hpy63ORF35P |
| 36 | M | M2.HpyF227ORFHP (100% identity) | GAAGA | M2.Hpy63ORF35P |
| 37 | R | HpyF227ORFHP (100% identity) | GAAGA | Hpy63ORF35P |
| 38 | transcriptional regulator | |||
| 48 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | HpyJSHR3ORF1940P (68% identity) | Hpy63ORF49P | |
| 52 | protease | |||
| 59 | terC family integral membrane protein | |||
| 60 | M | M1.HpySG32IV (99% identity) | CCTC | M1.Hpy63ORF60P |
| 61 | M | M1.Hpyfe12ORF7025P (79% identity) | CCTC | M2.Hpy63ORF60P |
| 62 | sodium/proline symporter | |||
| 145 | alpha-1,2-fucosyltransferase | |||
| 146 | M | M.HpyF226ORFNP (97% identity) | GATC | M.Hpy63ORF146P |
| 147 | R | HpyTW02IXP (97% identity) | GATC | Hpy63ORF146P |
| 148 | tetratricopeptide TPR_2 repeat protein | |||
| 201 | elongation factor P | |||
| ??? | M | M.HpyF18KORF204P (100% identity) | M.Hpy63ORF202P | |
| 205 | uncharacterized protein | |||
| 206 | type II restriction-modification system | |||
| 207 | type II restriction-modification system | |||
| 208 | R | HpyF18KORF204P (99% identity) | Hpy63ORF202P | |
| 209 | sialic acid synthase | |||
| 292 | exodeoxyribonuclease VII large subunit | |||
| 293 | R | HpyF209ORF300P (99% identity) | CCGG | Hpy63ORF294P |
| 294 | M | M.Hpyfe93ORF5875P (100% identity) | CCGG | M.Hpy63ORF294P |
| 295 | ATP-dependent protease binding subunit | |||
| 341 | polysaccharide deacetylase family protein | |||
| 342 | R | Hpy1136ORFQP (99% identity) | CTNAG | Hpy63ORF343P |
| 343 | M | M.Hpyfe17ORF5490P (100% identity) | CTNAG | M.Hpy63ORF343P |
| 344 | uncharacterized protein | |||
| 379 | GTP-binding protein LepA | |||
| 380 | M | M.Hpyfe99ORF5630P (100% identity) | M.Hpy63ORF380P | |
| 381 | uncharacterized protein | |||
| 482 | outer membrane protein HopK | |||
| 483 | M | M.HpyF216ORFMP (99% identity) | ATTAAT | M.Hpy63ORF483P |
| 484 | DD-heptosyltransferase | |||
| 485 | GTP-binding protein TypA | |||
| ??? | M | M.Hpyfe4ORF4755P (99% identity) | ACNGT | M.Hpy63ORF486P |
| ??? | R | Hpyfe82ORF4760P (87% identity) | ACNGT | Hpy63ORF486P |
| 490 | uncharacterized protein | |||
| 692 | outer membrane protein HorF | |||
| 693 | RM | HpyK022ORF3345P (92% identity) | Hpy63ORF693P | |
| 694 | glycerol-3-phosphate dehydrogenase | |||
| 903 | flagellar hook protein FlgE | |||
| 904 | R | HpyOK313ORFTP (99% identity) | GTNNAC | Hpy63ORF905P |
| 905 | M | M.HpyK025IX (97% identity) | GTNNAC | M.Hpy63ORF905P |
| 906 | rep helicase, single-stranded DNA-dependent | |||
| 1039 | biotin carboxylase | |||
| 1040 | M | M.Hpyfe12ORF2065P (100% identity) | TCNNGA | M.Hpy63ORF1040P |
| 1041 | R | HpyPF57XIIP (100% identity) | TCNNGA | Hpy63ORF1040P |
| 1042 | laminin subunit alpha-2 precursor | |||
| 1072 | uncharacterized protein | |||
| 1073 | M | M.HpyK28XIII (99% identity) | GCGC | M.Hpy63ORF1073P |
| 1074 | flgM protein | |||
| 1158 | haloacid dehalogenase-like hydrolase | |||
| 1159 | M | M.HpyF219ORFLP (96% identity) | CATG | M.Hpy63ORF1159P |
| 1160 | iceA2 protein | |||
| 1375 | DNA polymerase I | |||
| 1376 | S | S.HpyPU003ORF7220P (77% identity) | S.Hpy63ORF1377P | |
| 1377 | M | M.Hpy78ORF1441P (100% identity) | M.Hpy63ORF1377P | |
| 1378 | R | HpyJ016ORF7060P (100% identity) | Hpy63ORF1377P | |
| 1379 | restriction enzyme BcgI alpha chain-like | |||
| 1405 | permease; membrane protein | |||
| 1406 | M | M2.Hpyfe88ORF155P (77% identity) | CCATC | M1.Hpy63ORF1406P |
| 1407 | M | M2.HpyK27II (100% identity) | CCATC | M2.Hpy63ORF1406P |
| ??? | R | HpyK28IIP (98% identity) | Hpy63ORF1406P | |
| 1411 | outer membrane protein | |||
| 1427 | uncharacterized protein | |||
| 1428 | RM | HpyOK310ORFEP (90% identity) | Hpy63ORF1428P | |
| 1429 | type III restriction enzyme R protein | |||
| 1464 | uncharacterized protein | |||
| 1465 | M | M.HpyMA20VII (98% identity) | TGCA | M.Hpy63ORF1465P |
| 1466 | R | HpyOK88ORFHP (99% identity) | TGCA | Hpy63ORF1465P |
| 1467 | elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 32 | rod shape-determining protein MreC | |||
| 33 | R | HpyOK88ORFNP (96% identity) | Hpy63ORF34P | |
| 34 | M | M.HpyJ029ORF200P (98% identity) | M.Hpy63ORF34P | |
| 35 | type IIS restriction enzyme M2 protein | |||
| 1310 | endonuclease | |||
| 1311 | M | M.HpyF18KORF1338P (97% identity) | M.Hpy63ORF1311P | |
| 1312 | R | HpyF18KORF1338P (97% identity) | Hpy63ORF1311P | |
| 1313 | biotin synthase | |||
| 1428 | type IIG restriction-modification enzyme | |||
| 1429 | R | HpyK51ORF1410P (97% identity) | Hpy63ORF1430P | |
| ??? | M | M.Hpyfe97ORF40P (97% identity) | M.Hpy63ORF1430P | |
| 1432 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 205 | uncharacterized protein | |||
| 206 | R | HpyF18KMcrBP (100% identity) | Hpy63McrBP | |
| 208 | type II restriction enzyme | |||