Helicobacter pylori F28 |
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Putative Helicobacter pylori F28 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,616,737 bp
GenBank #: AP017339
REBASE acronym: Hpy28
Org_num: 22613
All begin HPF28_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 463 | polyphosphate kinase | |||
| 464 | S | S.Hpyfe104ORF3000P (70% identity) | S.Hpy28ORF465P | |
| ??? | M | M.Hpyfe85ORF4880P (95% identity) | M.Hpy28ORF465P | |
| ??? | R | Hpy83ORF499P (93% identity) | Hpy28ORF465P | |
| 470 | uncharacterized protein | |||
| 806 | outer membrane protein HofF | |||
| 807 | S | S.HpyCA16ORF5415P (98% identity) | S.Hpy28ORF807P | |
| 808 | cadmium-transporting ATPase, P-type | |||
| 863 | hydroxyethylthiazole kinase | |||
| 864 | R | HpyGU83AORFSP (95% identity) | Hpy28ORF866P | |
| 865 | S | S.Hpy3401ORF9570P (97% identity) | S.Hpy28ORF866P | |
| 866 | M | M.HpyK26ORF4185P (97% identity) | M.Hpy28ORF866P | |
| 867 | integral membrane protein | |||
| 1459 | FAD-dependent thymidylate synthase | |||
| 1461 | S | S.Hpy38ORF1484P (96% identity) | S.Hpy28ORF1462P | |
| 1462 | M | M.Hpy38ORF1484P (99% identity) | M.Hpy28ORF1462P | |
| 1463 | R | Hpyfe74ORF7605P (97% identity) | Hpy28ORF1462P | |
| 1464 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | hypothetical protein | |||
| 36 | M | M1.Hpy38ORF38P (100% identity) | GAAGA | M1.Hpy28ORF36P |
| 37 | M | M1.Hpyfe36ORF6935P (100% identity) | GAAGA | M2.Hpy28ORF36P |
| 38 | R | Hpy38ORF38P (100% identity) | GAAGA | Hpy28ORF36P |
| 39 | transcriptional regulator | |||
| 49 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | Hpy1291ORF14360P (89% identity) | Hpy28ORF50P | |
| 52 | protease | |||
| 59 | membrane protein TerC | |||
| 60 | M | M1.Hpy192ORFUP (99% identity) | CCTC | M1.Hpy28ORF60P |
| 61 | M | M2.HpyMKF8ORF63P (100% identity) | CCTC | M2.Hpy28ORF60P |
| 62 | R | HpyK035IVP (95% identity) | CCTC | Hpy28ORF60P |
| 63 | adenine/cytosine DNA methyltransferase | |||
| 102 | hrgA protein | |||
| 103 | M | M.Hpy38ORF110P (99% identity) | M.Hpy28ORF103P | |
| 104 | alpha-1,2-fucosyltransferase | |||
| 290 | exodeoxyribonuclease VII large subunit | |||
| 291 | M | M.Hpyfe63ORF5770P (99% identity) | TCGA | M.Hpy28ORF291P |
| 292 | uncharacterized protein | |||
| 292 | uncharacterized protein | |||
| 293 | R | HpyMKF3ORF317P (97% identity) | CCGG | Hpy28ORF294P |
| 294 | M | M.HpyPF16IV (100% identity) | CCGG | M.Hpy28ORF294P |
| 295 | ATP-dependent protease binding subunit | |||
| 380 | GTP-binding protein LepA | |||
| 381 | M | M.Hpyoh1ORF4535P (99% identity) | M.Hpy28ORF381P | |
| 382 | uncharacterized protein | |||
| 484 | outer membrane protein | |||
| 485 | M | M.HpyF20JORF776P (98% identity) | ATTAAT | M.Hpy28ORF485P |
| 486 | DD-heptosyltransferase | |||
| 487 | GTP-binding protein TypA | |||
| 488 | M | M.Hpy38ORF496P (100% identity) | ACGT | M.Hpy28ORF488P |
| 489 | R | HpyF75ORF493P (100% identity) | ACGT | Hpy28ORF488P |
| 490 | catalase-like protein | |||
| 506 | DNA gyrase subunit B | |||
| 507 | M | M.HpyK51ORF474P (99% identity) | GTAC | M.Hpy28ORF507P |
| 508 | R | Hpyfe64ORF5220P (98% identity) | GTAC | Hpy28ORF507P |
| 509 | m23/M37 family peptidase | |||
| 698 | outer membrane protein HorF | |||
| 699 | RM | HpyJSHR3ORF8810P (83% identity) | Hpy28ORF699BP | |
| 700 | RM | HpyTW21ORF3270P (39% identity) | Hpy28ORF699AP | |
| 701 | glycerol-3-phosphate dehydrogenase | |||
| 916 | flagellar hook protein FlgE | |||
| 917 | R | HpyK016XIP (93% identity) | GTNNAC | Hpy28ORF918P |
| 918 | M | M.HpyJSHR31ORF5270P (98% identity) | GTNNAC | M.Hpy28ORF918P |
| 919 | rep helicase, single-stranded DNA-dependent | |||
| 1048 | biotin carboxylase | |||
| 1049 | M | M.Hpyfe82ORF2040P (100% identity) | TCNNGA | M.Hpy28ORF1049P |
| ??? | R | HpyK109IVP (100% identity) | Hpy28ORF1049P | |
| 1052 | laminin subunit alpha-2 precursor | |||
| 1082 | uncharacterized protein | |||
| 1083 | M | M.HpyF75ORF1092P (100% identity) | GCGC | M.Hpy28ORF1083P |
| 1084 | negative regulator of flagellin synthesis FlgM | |||
| 1142 | outer membrane protein | |||
| 1143 | M | M.Hpyfe48ORF1580P (100% identity) | TCNGA | M.Hpy28ORF1143P |
| 1144 | R | Hpy38ORF1164P (99% identity) | TCNGA | Hpy28ORF1143P |
| 1145 | purine-nucleoside phosphorylase | |||
| 1173 | haloacid dehalogenase-like hydrolase | |||
| 1174 | M | M.Hpy38ORF1195P (100% identity) | CATG | M.Hpy28ORF1174P |
| 1175 | R | HpyJF38ORFAP (99% identity) | CATG | Hpy28ORF1174P |
| 1176 | serine acetyltransferase | |||
| 1385 | cytochrome c551 peroxidase | |||
| 1386 | R | Hpy38ORF1412P (99% identity) | Hpy28ORF1387P | |
| 1387 | M | M2.Hpyfe21ORF345P (99% identity) | M1.Hpy28ORF1387P | |
| 1388 | M | M2.Hpy3ORF14470P (99% identity) | M2.Hpy28ORF1387P | |
| 1389 | addiction module antidote protein | |||
| 1399 | DNA polymerase I | |||
| 1400 | S | Hpy28ORF1400P (18% identity) | S.Hpy28ORF1400P | |
| ??? | RM | Hpy38ORF1425P (79% identity) | Hpy28ORF1400P | |
| 1403 | hP1473-transformation associated protein | |||
| 1443 | transcription elongation factor NusA | |||
| 1444 | RM | HpyC208ORF7295P (69% identity) | Hpy28ORF1444P | |
| 1445 | cytoplasmic protein | |||
| 1484 | uncharacterized protein | |||
| 1485 | M | M.Hpy67ORF1479P (100% identity) | TGCA | M.Hpy28ORF1485P |
| 1486 | R | Hpy90ORF1482P (100% identity) | TGCA | Hpy28ORF1485P |
| 1487 | uncharacterized protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 32 | rod shape-determining protein MreC | |||
| 33 | R | Hpy38ORF36P (96% identity) | Hpy28ORF34P | |
| ??? | M | M.HpyGE16ORF6690P (91% identity) | M.Hpy28ORF34P | |
| 36 | type IIS restriction enzyme M2 protein | |||
| 1326 | multidrug resistance protein | |||
| 1327 | M | M.HpyJA104ORF320P (97% identity) | M.Hpy28ORF1327P | |
| 1328 | R | Hpyfe92ORF650P (88% identity) | Hpy28ORF1327P | |
| 1329 | biotin synthase | |||
| 1445 | cytoplasmic protein | |||
| 1446 | R | HpyP97ORFQP (97% identity) | Hpy28ORF1447P | |
| ??? | M | M.Hpy38ORF1470P (97% identity) | M.Hpy28ORF1447P | |
| 1449 | ATP-dependent DNA helicase RecG | |||