Helicobacter pylori F24 |
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Putative Helicobacter pylori F24 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,570,268 bp
GenBank #: AP017338
REBASE acronym: Hpy24
Org_num: 22612
All begin HPF24_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 458 | polyphosphate kinase | |||
| 459 | S | S.HpyDU7AORFFP (99% identity) | S.Hpy24ORF460P | |
| 460 | M | M.HpyK022IX (97% identity) | M.Hpy24ORF460P | |
| ??? | R | HpyTW10ORF2270P (92% identity) | Hpy24ORF460P | |
| 464 | uncharacterized protein | |||
| 518 | integral membrane protein | |||
| 519 | M | M.HpyF211ORF519P (97% identity) | M.Hpy24ORF519P | |
| 520 | S | S.HpyU011ORF2670P (94% identity) | S.Hpy24ORF519P | |
| 521 | R | HpyF235ORFLP (97% identity) | Hpy24ORF519P | |
| 522 | hydroxyethylthiazole kinase | |||
| 1432 | FAD-dependent thymidylate synthase | |||
| 1433 | S | S.HpyJSHR6ORF14880P (99% identity) | S.Hpy24ORF1436P | |
| 1434 | uncharacterized protein | |||
| 1435 | uncharacterized protein | |||
| ??? | M | M.Hpyfe126ORF7605P (96% identity) | M.Hpy24ORF1436P | |
| ??? | R | Hpy55ORF1503P (99% identity) | Hpy24ORF1436P | |
| 1440 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 32 | type IIS restriction enzyme R protein | |||
| 33 | M | M1.HpyTW24V (100% identity) | GAAGA | M1.Hpy24ORF31P |
| 34 | M | M1.HpyJSHR6ORF13800P (99% identity) | GAAGA | M2.Hpy24ORF31P |
| 35 | R | HpyDU7AORFCP (86% identity) | Hpy24ORF31P | |
| 35 | type IIS restriction enzyme R protein | |||
| 46 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | Hpy4125ORFJP (91% identity) | Hpy24ORF47P | |
| 49 | adenine-specific DNA methyltransferase | |||
| ??? | hypothetical protein | |||
| 49 | M | M.HpyF227ORFFP (99% identity) | GANTC | M.Hpy24ORF49P |
| ??? | R | HpyTW09IIIP (89% identity) | GANTC | Hpy24ORF49P |
| 52 | protease | |||
| 59 | terC family integral membrane protein | |||
| ??? | M | M1.Hpy3401ORF1550P (98% identity) | CCTC | M1.Hpy24ORF60P |
| 62 | M | M1.HpyJSHR6ORF13520P (100% identity) | CCTC | M2.Hpy24ORF60P |
| 63 | sodium/proline symporter | |||
| 150 | alpha-1,2-fucosyltransferase | |||
| 151 | M | M.Hpy3ORF2320P (98% identity) | M.Hpy24ORF151P | |
| 152 | hrgA protein | |||
| 286 | exodeoxyribonuclease VII large subunit | |||
| 287 | M | M.HpyPF16XI (99% identity) | TCGA | M.Hpy24ORF287P |
| 288 | uncharacterized protein | |||
| 289 | type III adenine methyltransferase | |||
| 290 | R | HpyF94ORF968P (99% identity) | CCGG | Hpy24ORF291P |
| 291 | M | M.HpyF18KORF294P (99% identity) | CCGG | M.Hpy24ORF291P |
| 292 | ATP-dependent protease binding subunit | |||
| 481 | outer membrane protein HopK | |||
| 482 | M | M.HpyF233ORFOP (99% identity) | ATTAAT | M.Hpy24ORF482P |
| 483 | type II adenine specific methyltransferase | |||
| 484 | GTP-binding protein TypA | |||
| 485 | M | M.HpyJA106II (99% identity) | ACNGT | M.Hpy24ORF485P |
| 486 | R | Hpyfe33ORF4780P (100% identity) | ACNGT | Hpy24ORF485P |
| 487 | catalase-like protein | |||
| 577 | cadmium-transporting ATPase, P-type | |||
| 578 | M | M.Hpy70ORF586P (100% identity) | M.Hpy24ORF578P | |
| 579 | R | HpyJSHR6ORF8410P (100% identity) | Hpy24ORF578P | |
| 580 | hof-family outer membrane protein | |||
| 691 | outer membrane protein | |||
| 692 | RM | Hpy63ORF693P (67% identity) | Hpy24ORF692BP | |
| 693 | RM | HpyG272ORF3895AP (92% identity) | Hpy24ORF692AP | |
| 694 | glycerol-3-phosphate dehydrogenase | |||
| 864 | m23/M37 family peptidase | |||
| 865 | R | HpySG19VIIIP (98% identity) | GTAC | Hpy24ORF866P |
| 866 | M | M.HpyJSHR6ORF5710P (99% identity) | GTAC | M.Hpy24ORF866P |
| 867 | DNA gyrase subunit B | |||
| 903 | flagellar hook protein FlgE | |||
| 904 | R | HpyK044IXP (98% identity) | GTNNAC | Hpy24ORF905P |
| 905 | M | M.Hpy1867AORF8960P (98% identity) | GTNNAC | M.Hpy24ORF905P |
| 906 | rep helicase, single-stranded DNA-dependent | |||
| 1036 | biotin carboxylase | |||
| 1037 | M | M.Hpy5ORF11370P (100% identity) | TCNNGA | M.Hpy24ORF1037P |
| 1038 | R | Hpyfe8ORF4870P (100% identity) | TCNNGA | Hpy24ORF1037P |
| 1039 | laminin subunit alpha-2 precursor | |||
| 1070 | uncharacterized protein | |||
| 1071 | M | M.HpyK51ORF1049P (98% identity) | M.Hpy24ORF1071P | |
| 1072 | negative regulator of flagellin synthesis FlgM | |||
| 1153 | haloacid dehalogenase-like hydrolase | |||
| 1154 | M | M.HpyJSHR6ORF2790P (100% identity) | CATG | M.Hpy24ORF1154P |
| 1155 | iceA2 protein | |||
| 1370 | DNA polymerase I | |||
| 1371 | S | S.HpyJ015ORF6975P (98% identity) | S.Hpy24ORF1372P | |
| 1372 | RM | HpyPF57ORF7025P (99% identity) | Hpy24ORF1372P | |
| 1373 | hP1473-transformation associated protein | |||
| 1398 | permease; membrane protein | |||
| 1399 | M | M2.Hpyfe88ORF155P (100% identity) | CCATC | M1.Hpy24ORF1399P |
| ??? | M | M2.HpyMKM6ORF1401P (100% identity) | M2.Hpy24ORF1399P | |
| ??? | R | HpyMKM6ORF1401P (99% identity) | Hpy24ORF1399P | |
| 1405 | outer membrane protein HorK | |||
| 1418 | transcription elongation factor NusA | |||
| 1419 | RM | HpyDU7AORFRP (97% identity) | Hpy24ORF1419P | |
| 1420 | type III restriction enzyme R protein | |||
| 1456 | uncharacterized protein | |||
| 1457 | M | M.HpyDU7AORFUP (99% identity) | TGCA | M.Hpy24ORF1457P |
| 1458 | R | HpyDU7AORFUP (99% identity) | TGCA | Hpy24ORF1457P |
| 1459 | uncharacterized protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1305 | endonuclease | |||
| 1306 | M | M.HpyK021ORF6500P (95% identity) | M.Hpy24ORF1306P | |
| 1307 | R | HpyDU7AORFOP (89% identity) | Hpy24ORF1306P | |
| 1308 | biotin synthase | |||
| 1419 | type IIS restriction enzyme R and M protein | |||
| 1420 | R | HpyDU7AORFSP (98% identity) | Hpy24ORF1421P | |
| 1421 | M | M.Hpyfe88ORF40P (97% identity) | M.Hpy24ORF1421P | |
| 1422 | ATP-dependent DNA helicase RecG | |||