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Putative Helicobacter pylori F21 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,566,831 bp
GenBank #: AP017336
REBASE acronym: Hpy21
Org_num: 22610
All begin HPF21_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
407 | integral membrane protein | |||
408 | M | M.HpyTW24ORF4295P (92% identity) | M.Hpy21ORF408P | |
409 | S | S2.Hpy21ORF469P (41% identity) | S1.Hpy21ORF408P | |
410 | S | S.HpyOki112ORF2775P (95% identity) | S2.Hpy21ORF408P | |
411 | R | HpyP30ORFTP (98% identity) | Hpy21ORF408P | |
412 | hydroxyethylthiazole kinase | |||
468 | cadmium-transporting ATPase, P-type | |||
469 | S | S2.Hpy21ORF469P (41% identity) | S1.Hpy21ORF469P | |
470 | S | S.Hpyfe39ORF3335P (95% identity) | S2.Hpy21ORF469P | |
471 | outer membrane protein HofF | |||
795 | uncharacterized protein | |||
??? | R | HpyG272ORF5090P (94% identity) | Hpy21ORF798P | |
798 | M | M.Hpy63ORF467P (89% identity) | M.Hpy21ORF798P | |
799 | S | S.HpyF216ORFNP (99% identity) | S.Hpy21ORF798P | |
800 | polyphosphate kinase | |||
1447 | FAD-dependent thymidylate synthase | |||
1448 | S | S.HpyK119ORF7290P (96% identity) | S.Hpy21ORF1450P | |
1449 | uncharacterized protein | |||
1450 | M | M.HpyP88ORFOP (99% identity) | M.Hpy21ORF1450P | |
??? | R | Hpy17ORF1438P (97% identity) | Hpy21ORF1450P | |
1453 | phosphonate metabolism protein PhnI | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
47 | nicotinate-nucleotide pyrophosphorylase | |||
??? | RM | HpyCA1ORF6600P (90% identity) | Hpy21ORF48P | |
??? | hypothetical protein | |||
??? | hypothetical protein | |||
??? | M | M.Hpyfe83ORF6875P (99% identity) | GANTC | M.Hpy21ORF50P |
53 | R | HpyF227ORFFP (99% identity) | GANTC | Hpy21ORF50P |
54 | protease | |||
62 | uncharacterized protein | |||
63 | M | M2.HpyF227ORFWP (98% identity) | CCTC | M1.Hpy21ORF63P |
64 | M | M2.HpyJ026VIP (94% identity) | CCTC | M2.Hpy21ORF63P |
65 | sodium/proline symporter | |||
185 | flgM protein | |||
186 | M | M.HpyK009XIII (99% identity) | GCGC | M.Hpy21ORF186P |
187 | uncharacterized protein | |||
220 | laminin subunit alpha-2 precursor | |||
221 | R | Hpy83ORF1099P (100% identity) | TCNNGA | Hpy21ORF222P |
222 | M | M.Hpyfe82ORF2040P (99% identity) | TCNNGA | M.Hpy21ORF222P |
223 | biotin carboxylase | |||
354 | rep helicase, single-stranded DNA-dependent | |||
355 | M | M.Hpy53ORFPP (98% identity) | GTNNAC | M.Hpy21ORF355P |
356 | R | HpyTW04XIP (100% identity) | Hpy21ORF355P | |
357 | flagellar hook protein FlgE | |||
589 | uncharacterized protein | |||
??? | RM | HpyHP37ORF3510P (71% identity) | Hpy21ORF590P | |
594 | glycerol-3-phosphate dehydrogenase | |||
752 | m23/M37 family peptidase | |||
753 | R | Hpy17ORF391P (100% identity) | Hpy21ORF754P | |
754 | M | M.Hpy17ORF391P (99% identity) | GTAC | M.Hpy21ORF754P |
755 | DNA gyrase subunit B | |||
773 | uncharacterized protein | |||
774 | R | HpyK51ORF455P (97% identity) | ACNGT | Hpy21ORF775P |
??? | M | M.HpyP98ORFXP (98% identity) | ACNGT | M.Hpy21ORF775P |
777 | GTP-binding protein TypA/BipA | |||
778 | type II adenine specific methyltransferase | |||
779 | M | M.HpyJ021III (98% identity) | ATTAAT | M.Hpy21ORF779P |
780 | outer membrane protein | |||
882 | uncharacterized protein | |||
??? | M | M.Hpyoh1ORF4535P (99% identity) | M.Hpy21ORF883P | |
885 | GTP-binding protein LepA | |||
921 | uncharacterized protein | |||
922 | M | M.Hpy17ORF915P (99% identity) | CTNAG | M.Hpy21ORF922P |
??? | R | Hpy17ORF915P (100% identity) | Hpy21ORF922P | |
925 | polysaccharide deacetylase family protein | |||
973 | ATP-dependent protease binding subunit | |||
974 | M | M.Hpy898ORF1620P (99% identity) | CCGG | M.Hpy21ORF974P |
975 | R | Hpy24ORF291P (72% identity) | Hpy21ORF974P | |
976 | uncharacterized protein | |||
976 | uncharacterized protein | |||
977 | M | M.Hpy17ORF971P (100% identity) | TCGA | M.Hpy21ORF977P |
978 | exodeoxyribonuclease VII large subunit | |||
1113 | 53 aa hypothetical protein | |||
1114 | R | HpyMKM5ORF107P (95% identity) | Hpy21ORF1115P | |
1115 | M | M.HpyJ013VIII (98% identity) | GATC | M.Hpy21ORF1115P |
1116 | alpha-1,2-fucosyltransferase | |||
1157 | haloacid dehalogenase-like hydrolase | |||
1158 | M | M.HpyJ021I (100% identity) | CATG | M.Hpy21ORF1158P |
??? | R | HpyJ015IP (95% identity) | CATG | Hpy21ORF1158P |
1161 | serine O-acetyltransferase | |||
1324 | lipopolysaccharide 1,2-glucosyltransferase RfaJ | |||
1325 | R | HpyJA109ORF6630P (99% identity) | CGCG | Hpy21ORF1326P |
1326 | M | M.HpyK25ORF5225P (100% identity) | CGCG | M.Hpy21ORF1326P |
1327 | uncharacterized protein | |||
1381 | DNA polymerase I | |||
1382 | S | S.HpyBR12ORF6855P (66% identity) | S.Hpy21ORF1383P | |
1383 | M | M.Hpy78ORF1441P (100% identity) | M.Hpy21ORF1383P | |
1384 | R | HpyJ016ORF7060P (100% identity) | Hpy21ORF1383P | |
1385 | restriction enzyme BcgI alpha chain-like | |||
1411 | permease; membrane protein | |||
1412 | M | M1.Hpy17ORF1399P (99% identity) | CCATC | M1.Hpy21ORF1412P |
1413 | M | DNA adenine methylase | CCATC | M2.Hpy21ORF1412P |
??? | R | HpyP96ORFYP (95% identity) | CCATC | Hpy21ORF1412P |
1416 | outer membrane protein | |||
1429 | transcription elongation factor NusA | |||
??? | RM | Hpyfe58ORF60P (88% identity) | Hpy21ORF1430P | |
1432 | uncharacterized protein | |||
1471 | type II methylase protein | |||
1472 | M | type II methylase protein | TGCA | M.Hpy21ORF1471P |
1473 | R | HpyK111XP (93% identity) | TGCA | Hpy21ORF1471P |
1474 | uncharacterized protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
32 | rod shape-determining protein MreC | |||
??? | R | Hpy78ORF39P (94% identity) | Hpy21ORF36P | |
36 | M | M.Hpy17ORF34P (99% identity) | M.Hpy21ORF36P | |
37 | transcriptional regulator | |||
1309 | endonuclease | |||
??? | M | M.HpyJF13ORF1336P (98% identity) | M.Hpy21ORF1310P | |
1312 | R | Hpyfe8ORF20P (88% identity) | Hpy21ORF1310P | |
1313 | biotin synthase | |||
1434 | uncharacterized protein | |||
1435 | R | HpyMKF3ORF1447P (98% identity) | Hpy21ORF1436P | |
??? | M | M.HpyK050ORF7255P (96% identity) | M.Hpy21ORF1436P | |
1438 | ATP-dependent DNA helicase RecG |