Helicobacter pylori F210 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori F210 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,634,312 bp
GenBank #: AP017334
REBASE acronym: HpyF210
Org_num: 22587
All begin HPF210_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 480 | polyphosphate kinase | |||
| 481 | S | S.HpyL036ORF2325P (98% identity) | S.HpyF210ORF482P | |
| 482 | M | M.HpyP88ORFHP (98% identity) | M.HpyF210ORF482P | |
| ??? | R | HpyF209ORF467P (93% identity) | HpyF210ORF482P | |
| 484 | type I restriction enzyme R protein | |||
| 534 | integral membrane protein | |||
| 535 | M | M.Hpy154ORF4345P (97% identity) | M.HpyF210ORF535P | |
| 536 | S | S.HpyCA23ORF2720P (86% identity) | S1.HpyF210ORF535P | |
| 537 | S | S.HpyGU71CORFMP (60% identity) | S2.HpyF210ORF535P | |
| 538 | R | HpyF228ORFNP (98% identity) | HpyF210ORF535P | |
| 539 | hydroxyethylthiazole kinase | |||
| 596 | cadmium-transporting ATPase, P-type | |||
| 597 | S | S.Hpy673ORF4325P (88% identity) | S1.HpyF210ORF597P | |
| 597 | S | S.HpyF216ORFLP (64% identity) | S2.HpyF210ORF597P | |
| 598 | outer membrane protein HofF | |||
| 1484 | FAD-dependent thymidylate synthase | |||
| 1485 | S | S.HpySG24V (91% identity) | S.HpyF210ORF1486P | |
| 1486 | M | M.HpyOK303ORFHP (98% identity) | M.HpyF210ORF1486P | |
| 1487 | R | Hpybs3ORFKP (96% identity) | HpyF210ORF1486P | |
| 1488 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 44 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | Hpyfe113ORF3820P (88% identity) | HpyF210ORF45P | |
| 47 | adenine-specific DNA methyltransferase | |||
| ??? | hypothetical protein | |||
| 47 | M | M.Hpyfe77ORF7155P (99% identity) | GANTC | M.HpyF210ORF47P |
| 48 | R | HpyMA10VP (98% identity) | GANTC | HpyF210ORF47P |
| 49 | adenine specific DNA methyltransferase | |||
| 57 | terC family integral membrane protein | |||
| 58 | M | M1.HpyT027V (99% identity) | CCTC | M1.HpyF210ORF58P |
| 59 | M | M1.HpyJSHR31ORF13790P (99% identity) | CCTC | M2.HpyF210ORF58P |
| 60 | R | HpyJF13ORF59P (98% identity) | CCTC | HpyF210ORF58P |
| 61 | type II R-M system restriction endonuclease | |||
| 60 | restriction endonuclease | |||
| ??? | R | HpyJ016VIIP (98% identity) | CCTTC | HpyF210ORF63P |
| 63 | M | M.HpyJ016VII (99% identity) | CCTTC | M.HpyF210ORF63P |
| 64 | sodium/proline symporter | |||
| 149 | alpha-1,2-fucosyltransferase | |||
| 150 | M | M.HpyJA103ORF730P (87% identity) | GATC | M.HpyF210ORF150P |
| 151 | R | HpyOK95ORFLP (97% identity) | GATC | HpyF210ORF150P |
| 152 | malonyl coenzyme A-acyl carrier protein | |||
| 304 | exodeoxyribonuclease VII large subunit | |||
| 305 | M | M.Hpyfe37ORF5745P (100% identity) | TCGA | M.HpyF210ORF305P |
| 306 | uncharacterized protein | |||
| 307 | type III adenine methyltransferase | |||
| ??? | R | HpyK51ORF260P (92% identity) | CCGG | HpyF210ORF310P |
| 310 | M | M.HpyGU82AORFAP (98% identity) | CCGG | M.HpyF210ORF310P |
| 311 | ATP-dependent protease binding subunit | |||
| 357 | polysaccharide deacetylase family protein | |||
| 358 | R | HpyHP94VP (97% identity) | HpyF210ORF359P | |
| 359 | M | M.HpyF228ORFJP (99% identity) | M.HpyF210ORF359P | |
| 360 | uncharacterized protein | |||
| 499 | outer membrane protein HopK | |||
| 500 | M | M.HpyF228ORFLP (99% identity) | ATTAAT | M.HpyF210ORF500P |
| 501 | DD-heptosyltransferase | |||
| 502 | GTP-binding protein TypA | |||
| 503 | M | M.HpyP88ORFVP (88% identity) | ACNGT | M.HpyF210ORF503P |
| 504 | R | HpyK51ORF455P (98% identity) | ACNGT | HpyF210ORF503P |
| 505 | catalase-like protein | |||
| 740 | outer membrane protein | |||
| ??? | RM | Hpyfe102ORF4025P (84% identity) | HpyF210ORF741P | |
| 743 | glycerol-3-phosphate dehydrogenase | |||
| 898 | m23/M37 family peptidase | |||
| 899 | R | HpyMKF10ORF897P (100% identity) | GTAC | HpyF210ORF900P |
| 900 | M | M.HpyMKF10ORF897P (99% identity) | GTAC | M.HpyF210ORF900P |
| 901 | DNA gyrase subunit B | |||
| 938 | flagellar hook protein FlgE | |||
| 939 | R | HpyJ015VIIIP (91% identity) | GTNNAC | HpyF210ORF940P |
| 940 | M | M.HpyMKF10ORF939P (98% identity) | GTNNAC | M.HpyF210ORF940P |
| 941 | rep helicase, single-stranded DNA-dependent | |||
| 1079 | biotin carboxylase | |||
| 1080 | M | M.HpySG13XIII (99% identity) | TCNNGA | M.HpyF210ORF1080P |
| 1081 | R | Hpyfe93ORF2050P (100% identity) | TCNNGA | HpyF210ORF1080P |
| 1082 | laminin subunit alpha-2 precursor | |||
| 1112 | uncharacterized protein | |||
| 1113 | M | M.HpyJA101XI (99% identity) | GCGC | M.HpyF210ORF1113P |
| 1114 | negative regulator of flagellin synthesis FlgM | |||
| 1197 | haloacid dehalogenase-like hydrolase | |||
| 1198 | M | M.Hpy3401ORF12760P (99% identity) | CATG | M.HpyF210ORF1198P |
| ??? | R | HpyK114IP (96% identity) | HpyF210ORF1198P | |
| 1201 | serine O-acetyltransferase | |||
| 1419 | DNA polymerase I | |||
| 1420 | S | S.HpyOki128ORF6635P (46% identity) | S.HpyF210ORF1420P | |
| 1420 | RM | type IIS restriction enzyme R protein | HpyF210ORF1420P | |
| ??? | hypothetical protein | |||
| 1420 | type IIS restriction enzyme R protein | |||
| ??? | M | M.HpyJ016ORF7060P (88% identity) | M.HpyF210ORF1421P | |
| 1423 | R | HpyAR10ORF6950P (99% identity) | HpyF210ORF1421P | |
| 1424 | restriction enzyme BcgI alpha chain-like | |||
| 1423 | type II site-specific deoxyribonuclease | |||
| 1424 | RM | restriction enzyme BcgI alpha chain-like | HpyF210ORF1424P | |
| 1425 | hP1473-transformation associated protein | |||
| 1450 | permease; membrane protein | |||
| 1451 | M | M2.Hpyfe71ORF135P (99% identity) | CCATC | M1.HpyF210ORF1451P |
| 1452 | M | M2.HpyMKM6ORF1401P (99% identity) | CCATC | M2.HpyF210ORF1451P |
| 1453 | R | Hpy78ORF1470P (95% identity) | HpyF210ORF1451P | |
| 1454 | outer membrane protein HorK | |||
| 1468 | transcription elongation factor NusA | |||
| 1469 | RM | HpyOK34ORFGP (93% identity) | HpyF210ORF1469P | |
| 1470 | cytoplasmic protein | |||
| 1504 | uncharacterized protein | |||
| 1505 | M | M.Hpyfe85ORF7390P (99% identity) | TGCA | M.HpyF210ORF1505P |
| 1506 | R | Hpyfe57ORF7485P (99% identity) | TGCA | HpyF210ORF1505P |
| 1507 | 63 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1347 | endonuclease | |||
| 1348 | M | M.HpyOK302ORFCP (97% identity) | M.HpyF210ORF1348P | |
| 1349 | R | HpyJ002ORF6525P (85% identity) | HpyF210ORF1348P | |
| 1350 | biotin synthase | |||
| 1470 | cytoplasmic protein | |||
| 1471 | R | Hpy3401ORF70P (98% identity) | HpyF210ORF1472P | |
| ??? | M | M.Hpy1829AORF14410P (97% identity) | M.HpyF210ORF1472P | |
| 1474 | ATP-dependent DNA helicase RecG | |||