Helicobacter pylori F20 |
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Putative Helicobacter pylori F20 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,578,736 bp
GenBank #: AP017333
REBASE acronym: HpyF20J
Org_num: 22569
All begin HPF20_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 678 | outer membrane protein HofF | |||
| 679 | S | S.HpyJA111XI (45% identity) | S1.HpyF20JORF679P | |
| 680 | S | S.HpyJA111XI (87% identity) | S2.HpyF20JORF679P | |
| 681 | cadmium-transporting ATPase, P-type | |||
| 737 | hydroxyethylthiazole kinase | |||
| 738 | R | Hpy38ORF724P (97% identity) | HpyF20JORF741P | |
| 739 | S | S1.HpyF20JORF679P (95% identity) | S1.HpyF20JORF741P | |
| ??? | S | Restriction endonuclease subunit S | S2.HpyF20JORF741P | |
| 741 | M | M.HpyPF16XV (96% identity) | M.HpyF20JORF741P | |
| 742 | phosphatidic acid phosphatase | |||
| 790 | uncharacterized protein | |||
| ??? | R | HpyJA109ORF2285P (92% identity) | HpyF20JORF793P | |
| 793 | M | M.Hpy673ORF2300P (97% identity) | M.HpyF20JORF793P | |
| 794 | S | S.HpyL012ORF4440P (98% identity) | S.HpyF20JORF793P | |
| 795 | polyphosphate kinase | |||
| 1428 | FAD-dependent thymidylate synthase | |||
| 1429 | S | type I R-M system specificity subunit | S.HpyF20JORF1432P | |
| 1430 | uncharacterized protein | |||
| 1431 | uncharacterized protein | |||
| 1432 | M | M.HpyP30ORFHP (96% identity) | M.HpyF20JORF1432P | |
| ??? | R | HpyMKF10ORF1473P (98% identity) | HpyF20JORF1432P | |
| 1435 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | type IIS restriction enzyme M2 protein | |||
| 36 | M | M2.HpyF227ORFHP (100% identity) | GAAGA | M.HpyF20JORF35P |
| 37 | R | HpyP88ORFQP (99% identity) | GAAGA | HpyF20JORF35P |
| 38 | transcriptional regulator | |||
| 48 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | HpyI022ORF6470P (83% identity) | HpyF20JORF49P | |
| 51 | protease | |||
| 58 | terC family integral membrane protein | |||
| ??? | M | M.HpyF20JORFAP (100% identity) | CCTC | M1.HpyF20JORF60P |
| 60 | M | M2.HpyMKF8ORF63P (100% identity) | CCTTC | M2.HpyF20JORF60P |
| 61 | R | HpyF209ORF60P (100% identity) | HpyF20JORF60P | |
| 62 | type II R-M system restriction endonuclease | |||
| 58 | terC family integral membrane protein | |||
| ??? | M | M1.HpyF20JORF60P (100% identity) | CCTC | M.HpyF20JORFAP |
| 60 | cytosine specific DNA methyltransferase | |||
| 61 | restriction endonuclease | |||
| 62 | R | HpyF226ORFIP (100% identity) | HpyF20JORF62P | |
| 63 | M | M.HpyF226ORFIP (100% identity) | CCTTC | M.HpyF20JORF62P |
| 64 | sodium/proline symporter | |||
| 186 | negative regulator of flagellin synthesis FlgM | |||
| 187 | M | M.Hpyfe24ORF2020P (99% identity) | GCGC | M.HpyF20JORF187P |
| 188 | uncharacterized protein | |||
| 220 | laminin subunit alpha-2 precursor | |||
| 221 | R | Hpyfe8ORF4870P (100% identity) | TCNNGA | HpyF20JORF222P |
| 222 | M | M.Hpyfe12ORF2065P (100% identity) | TCNNGA | M.HpyF20JORF222P |
| 223 | biotin carboxylase | |||
| 353 | rep helicase, single-stranded DNA-dependent | |||
| 354 | M | M.HpyMKF8ORF913P (100% identity) | GTNNAC | M.HpyF20JORF354P |
| 355 | R | HpyJA112XIIP (93% identity) | GTNNAC | HpyF20JORF354P |
| 356 | flagellar hook protein FlgE | |||
| 396 | DNA gyrase subunit B | |||
| 397 | M | M.HpyMKF3ORF534P (99% identity) | GTAC | M.HpyF20JORF397P |
| 398 | R | Hpy28ORF507P (96% identity) | GTAC | HpyF20JORF397P |
| 399 | m23/M37 family peptidase | |||
| 557 | glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | HpyJSHR6ORF7360P (86% identity) | HpyF20JORF558P | |
| 561 | type IIG restriction-modification enzyme | |||
| 771 | catalase-like protein | |||
| 772 | R | HpyF227ORFDP (96% identity) | HpyF20JORF773P | |
| 773 | M | M.HpyF216ORFDP (98% identity) | ACNGT | M.HpyF20JORF773P |
| 774 | GTP-binding protein TypA | |||
| 775 | DD-heptosyltransferase | |||
| 776 | M | M.Hpy28ORF485P (98% identity) | ATTAAT | M.HpyF20JORF776P |
| 777 | outer membrane protein | |||
| 963 | ATP-dependent protease binding subunit | |||
| 964 | M | M.Hpyfe95ORF1830P (99% identity) | CCGG | M.HpyF20JORF964P |
| 965 | R | Hpy63ORF294P (97% identity) | CCGG | HpyF20JORF964P |
| 966 | exodeoxyribonuclease VII large subunit | |||
| 1101 | malonyl coenzyme A-acyl carrier protein | |||
| 1102 | R | Hpy154ORF545P (96% identity) | GATC | HpyF20JORF1103P |
| 1103 | M | M.HpyJ012V (97% identity) | GATC | M.HpyF20JORF1103P |
| 1104 | alpha-1,2-fucosyltransferase | |||
| 1148 | haloacid dehalogenase-like hydrolase | |||
| 1149 | M | M.HpyP88ORFSP (93% identity) | CATG | M.HpyF20JORF1149P |
| 1150 | iceA2 protein | |||
| 1367 | DNA-directed DNA polymerase I | |||
| 1368 | S | S.HpyIS3ORF6815P (94% identity) | S.HpyF20JORF1369P | |
| 1369 | RM | HpyJP26XV (99% identity) | HpyF20JORF1369P | |
| 1370 | hP1473-transformation associated protein | |||
| 1395 | permease; membrane protein | |||
| 1396 | M | M1.HpyHK840ORFJP (99% identity) | CCATC | M1.HpyF20JORF1396P |
| 1397 | M | M2.HpyMA22III (100% identity) | CCATC | M2.HpyF20JORF1396P |
| 1398 | R | HpyF226ORFCP (99% identity) | CCATC | HpyF20JORF1396P |
| 1399 | outer membrane protein HorK | |||
| 1415 | uncharacterized protein | |||
| 1416 | RM | HpyOK303ORFFP (92% identity) | HpyF20JORF1416P | |
| 1417 | type III restriction enzyme R protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 32 | rod shape-determining protein MreC | |||
| 33 | R | HpyF226ORFKP (98% identity) | HpyF20JORF34P | |
| 34 | M | M.HpyPF16XVII (98% identity) | M.HpyF20JORF34P | |
| 35 | type IIS restriction enzyme M2 protein | |||
| 1300 | multidrug resistance protein | |||
| 1301 | M | M.Hpy828ORF6985P (97% identity) | M.HpyF20JORF1301P | |
| ??? | R | Hpyfe92ORF650P (94% identity) | HpyF20JORF1301P | |
| 1304 | biotin synthase | |||
| 1416 | type IIG restriction-modification enzyme | |||
| 1417 | R | Hpy90ORF1448P (96% identity) | HpyF20JORF1418P | |
| 1418 | M | M.HpyF227ORFA1P (98% identity) | M.HpyF20JORF1418P | |
| 1419 | ATP-dependent DNA helicase RecG | |||