Helicobacter pylori F17 |
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Putative Helicobacter pylori F17 RM systems
Ref: Kojima,K.K. et al. Mol. Biol. Evol. 33 (11), 2848-2859 (2016)
REBASE ref # 23119
Complete sequence: 1,571,440 bp
GenBank #: AP017330
REBASE acronym: Hpy17
Org_num: 22566
All begin HPF17_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 673 | outer membrane protein HofF | |||
| 674 | S | S.HpyOK13ORFAP (96% identity) | S1.Hpy17ORF674P | |
| ??? | S | S2.Hpy17ORF736P (100% identity) | S2.Hpy17ORF674P | |
| 676 | cadmium-transporting ATPase, P-type | |||
| 731 | hydroxyethylthiazole kinase | |||
| ??? | R | Hpy28ORF866P (87% identity) | Hpy17ORF736P | |
| 734 | S | S.Hpy225ORF869P (61% identity) | S1.Hpy17ORF736P | |
| ??? | S | S2.Hpy17ORF674P (100% identity) | S2.Hpy17ORF736P | |
| 736 | M | M.Hpy28ORF866P (96% identity) | M.Hpy17ORF736P | |
| 737 | integral membrane protein | |||
| 789 | uncharacterized protein | |||
| ??? | R | HpyMA06ORF4245P (94% identity) | Hpy17ORF792P | |
| 792 | M | M.HpyOK302ORFTP (96% identity) | M.Hpy17ORF792P | |
| 793 | S | S.HpyCA20ORF2245P (98% identity) | S.Hpy17ORF792P | |
| 794 | polyphosphate kinase | |||
| 1435 | FAD-dependent thymidylate synthase | |||
| 1436 | S | S.HpyMA23ORF7245P (98% identity) | S.Hpy17ORF1438P | |
| 1437 | uncharacterized protein | |||
| 1438 | M | M.Hpy1829AORF14570P (98% identity) | M.Hpy17ORF1438P | |
| 1439 | R | Hpy21ORF1450P (97% identity) | Hpy17ORF1438P | |
| 1440 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 46 | nicotinate-nucleotide pyrophosphorylase | |||
| 47 | RM | HpyF209ORF48P (83% identity) | Hpy17ORF47P | |
| 48 | adenine-specific DNA methyltransferase | |||
| 47 | hypothetical protein | |||
| ??? | M | M.HpyTW19X (99% identity) | GANTC | M.Hpy17ORF48P |
| 51 | R | HpyTW09IIIP (87% identity) | GANTC | Hpy17ORF48P |
| 52 | protease | |||
| 59 | terC family integral membrane protein | |||
| 60 | M | M1.HpyMKM5ORF58P (90% identity) | CCTC | M1.Hpy17ORF60P |
| 61 | M | M1.HpyP88ORFKP (99% identity) | CCTC | M2.Hpy17ORF60P |
| 62 | sodium/proline symporter | |||
| 183 | flgM protein | |||
| 184 | M | M.HpyT029X (97% identity) | GCGC | M.Hpy17ORF184P |
| 185 | uncharacterized protein | |||
| 218 | laminin subunit alpha-2 precursor | |||
| 219 | R | Hpyfe22ORF2065P (93% identity) | TCNNGA | Hpy17ORF220P |
| 220 | M | M.Hpyfe120ORF2030P (100% identity) | TCNNGA | M.Hpy17ORF220P |
| 221 | biotin carboxylase | |||
| 350 | rep helicase, single-stranded DNA-dependent | |||
| 351 | M | M.Hpy30IX (97% identity) | GTNNAC | M.Hpy17ORF351P |
| 352 | R | HpyGE9ORF4640P (95% identity) | GTNNAC | Hpy17ORF351P |
| 353 | flagellar hook protein FlgE | |||
| 390 | DNA gyrase subunit B | |||
| 391 | M | M.Hpy21ORF754P (99% identity) | M.Hpy17ORF391P | |
| 392 | R | Hpy21ORF754P (100% identity) | Hpy17ORF391P | |
| 393 | m23/M37 family peptidase | |||
| 544 | polysaccharide biosynthesis protein | |||
| 545 | R | HpyMKM1ORF667P (100% identity) | CCNNGG | Hpy17ORF546P |
| ??? | M | M.Hpyfe56ORF3730P (100% identity) | CCNNGG | M.Hpy17ORF546P |
| 547 | polysaccharide biosynthesis protein | |||
| 563 | uncharacterized protein | |||
| ??? | RM | HpyAR9ORF3610P (64% identity) | Hpy17ORF564P | |
| 566 | glycerol-3-phosphate dehydrogenase | |||
| 768 | type II DNA modification enzyme | |||
| 769 | R | Hpyfe33ORF4780P (99% identity) | ACNGT | Hpy17ORF770P |
| 770 | M | M.HpySP207II (100% identity) | ACNGT | M.Hpy17ORF770P |
| 771 | GTP-binding protein TypA/BipA | |||
| 772 | DD-heptosyltransferase | |||
| 773 | M | M.HpyK119II (98% identity) | ATTAAT | M.Hpy17ORF773P |
| 774 | outer membrane protein | |||
| 914 | uncharacterized protein | |||
| 915 | M | M.Hpy21ORF922P (99% identity) | M.Hpy17ORF915P | |
| ??? | R | Hpy21ORF922P (100% identity) | Hpy17ORF915P | |
| 918 | polysaccharide deacetylase family protein | |||
| 966 | ATP-dependent protease binding subunit | |||
| ??? | M | M.Hpy898ORF1620P (99% identity) | CCGG | M.Hpy17ORF967P |
| 969 | R | endonuclease MjaVIP | CCGG | Hpy17ORF967P |
| 970 | uncharacterized protein | |||
| 970 | uncharacterized protein | |||
| 971 | M | M.Hpy21ORF977P (100% identity) | TCGA | M.Hpy17ORF971P |
| 972 | exodeoxyribonuclease VII large subunit | |||
| 1106 | 53 aa hypothetical protein | |||
| 1107 | R | HpyMKM5ORF107P (98% identity) | Hpy17ORF1108P | |
| 1108 | M | M.Hpy70ORF152P (98% identity) | M.Hpy17ORF1108P | |
| 1109 | alpha-1,2-fucosyltransferase | |||
| 1151 | haloacid dehalogenase-like hydrolase | |||
| 1152 | M | M.HpySG05I (99% identity) | M.Hpy17ORF1152P | |
| 1153 | iceA2 protein | |||
| 1314 | lipopolysaccharide 1,2-glucosyltransferase RfaJ | |||
| 1315 | R | HpyMKF3ORF1342P (99% identity) | Hpy17ORF1316P | |
| 1316 | M | M.HpyMKM5ORF1339P (99% identity) | M.Hpy17ORF1316P | |
| 1317 | uncharacterized protein | |||
| 1370 | DNA polymerase I | |||
| 1371 | S | S.HpyOki128ORF6635P (42% identity) | S.Hpy17ORF1372P | |
| 1372 | RM | type IIG restriction-modification enzyme | Hpy17ORF1372P | |
| 1373 | hP1473-transformation associated protein | |||
| 1398 | permease; membrane protein | |||
| 1399 | M | M1.Hpy21ORF1412P (99% identity) | M1.Hpy17ORF1399P | |
| 1400 | M | M2.HpySG04III (99% identity) | M2.Hpy17ORF1399P | |
| ??? | R | HpyF232ORFDP (98% identity) | Hpy17ORF1399P | |
| 1403 | outer membrane protein | |||
| 1416 | transcription elongation factor NusA | |||
| ??? | RM | Hpyfe57ORF60P (88% identity) | Hpy17ORF1417P | |
| 1419 | uncharacterized protein | |||
| 1456 | uncharacterized protein | |||
| 1457 | M | M.HpyMKF10ORF1493P (98% identity) | M.Hpy17ORF1457P | |
| 1458 | R | HpyP30ORFIP (99% identity) | Hpy17ORF1457P | |
| 1459 | uncharacterized protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 32 | rod shape-determining protein MreC | |||
| 33 | R | HpyTW06ORF4095P (94% identity) | Hpy17ORF34P | |
| ??? | M | M.Hpy21ORF36P (99% identity) | M.Hpy17ORF34P | |
| 36 | transcriptional regulator | |||
| 1303 | endonuclease | |||
| 1304 | M | M.HpyOK302ORFCP (98% identity) | M.Hpy17ORF1304P | |
| 1305 | R | HpyOK36ORFLP (88% identity) | Hpy17ORF1304P | |
| 1306 | biotin synthase | |||
| 1421 | uncharacterized protein | |||
| 1422 | R | HpyGU82AORFCP (97% identity) | Hpy17ORF1423P | |
| ??? | M | M.HpyMKF10ORF1458P (96% identity) | M.Hpy17ORF1423P | |
| 1425 | ATP-dependent DNA helicase RecG | |||