Salmonella enterica subsp. enterica serovar Heidelberg SARA35 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Heidelberg SARA35 RM systems
Ref: Timme,R.E. et al. Genome Biol Evol 5 (11), 2109-2123 (2013)
REBASE ref # 17417
Complete sequence: 4,751,206 bp
GenBank #: CP019176
REBASE acronym: Sen35
Org_num: 22588
All begin SEEHRA35_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 20580 | restriction endonuclease | |||
| 20585 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen35IP |
| 20590 | M | M.Sens12373ORF19415P (100% identity) | GAGNNNNNNRTAYG | M.Sen35I |
| 20595 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen35I |
| 20600 | 110 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1840 | cell division protein DamX | |||
| 1845 | M | M.StyTDamP (100% identity) | GATC | M.Sen35DamP |
| 1850 | ribulose-phosphate 3-epimerase | |||
| 2345 | DUF2556 domain-containing protein | |||
| 2350 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen35ORF2350P |
| 2355 | Fis family transcriptional regulator | |||
| 9400 | phosphohydrolase | |||
| 9405 | M | M.SenZ223DcmP (100% identity) | CCWGG | M.Sen35DcmP |
| 9410 | V | V.StyTDcmP (100% identity) | V.Sen35DcmP | |
| 9415 | drug/metabolite exporter YedA | |||
| 14710 | exonuclease | |||
| 14715 | M | M.Sens12373ORF14090P (100% identity) | GATC | M.Sen35ORF14715P |
| 14720 | 81 aa hypothetical protein | |||
| 20775 | RM | Sens12373ORF19575P (100% identity) | GATCAG | Sen35ORF20775P |
| 20780 | helicase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17925 | cytochrome ubiquinol oxidase subunit I | |||
| 17930 | R | Sens12373ORF17180P (99% identity) | CAGAG | Sen35IIP |
| 17935 | M | M.SenZ223ORF2150P (100% identity) | CAGAG | M.Sen35II |
| 17940 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20575 | 95 aa hypothetical protein | |||
| 20580 | R | StyUK1MrrP (100% identity) | Sen35MrrP | |
| 20585 | type I restriction-modification system | |||