Escherichia coli 2016C-3936C1 |
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Putative Escherichia coli 2016C-3936C1 RM systems
Ref: Lindsey,R.L. et al. unpublished
REBASE ref # 23890
| Sequence length: | GenBank #: | |
| Chromosome: | 5,060,620 bp | CP018770 |
| plasmid unnamed1: | 19,788 bp | CP018771 |
| plasmid unnamed4: | 95,441 bp | CP018774 |
REBASE acronym: Eco3936
Org_num: 22544
All begin BUE82_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 28980 | 72 aa hypothetical protein | |||
| 2485 | R | EcoPSJ07ORF28100P (99% identity) | AAAYNNNNNNNTTC | Eco3936IIIP |
| 2490 | S | S1.EcoLR25ORF4260P (100% identity) | AAAYNNNNNNNTTC | S.Eco3936III |
| 2495 | M | M.EcoLR25ORF4260P (100% identity) | AAAYNNNNNNNTTC | M.Eco3936III |
| 2500 | 50S ribosome-binding GTPase | |||
| 15675 | transcription factor | |||
| 15680 | M | M.EcosE2ORF13465P (99% identity) | YTCANNNNNNGTTY | M.Eco3936I |
| 15685 | S | S.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | S.Eco3936I |
| 15690 | 218 aa hypothetical protein | |||
| 15695 | Appr-1-p processing protein | |||
| 15700 | R | EcoNIH1IIP (100% identity) | YTCANNNNNNGTTY | Eco3936IP |
| 15705 | metal-dependent hydrolase | |||
| 21195 | restriction endonuclease | |||
| 21200 | R | EcoW102ORF20700P (99% identity) | CCANNNNNNNGTGC | Eco3936IIP |
| 21205 | M | M.SflFF24ORF19705P (99% identity) | CCANNNNNNNGTGC | M.Eco3936II |
| 21210 | S | S.Eal36ORF20435P (68% identity) | CCANNNNNNNGTGC | S.Eco3936II |
| 21215 | 113 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 720 | cell division protein DamX | |||
| 725 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco3936Dam |
| 730 | ribulose-phosphate 3-epimerase | |||
| 1285 | DUF2556 domain-containing protein | |||
| 1290 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.Eco3936ORF1290P |
| 1295 | Fis family transcriptional regulator | |||
| 9065 | phosphohydrolase | |||
| 9070 | M | M.EcoEFF60DcmP (100% identity) | CCWGG | M.Eco3936DcmP |
| 9075 | V | V.EcoKE55DcmP (100% identity) | V.Eco3936DcmP | |
| 9080 | drug/metabolite exporter YedA | |||
| 13240 | 73 aa hypothetical protein | |||
| 13260 | M | M.SboBSORF1444P (99% identity) | A | M.Eco3936ORF13260P |
| 13265 | TrmB family transcriptional regulator | |||
| 16460 | resolvase | |||
| 16465 | M | M.Esp911AORF970P (100% identity) | GGTNACC | M.Eco3936IV |
| 16470 | R | Esp911AORF970P (100% identity) | GGTNACC | Eco3936IVP |
| 29275 | IS1 family transposase | |||
| plasmid unnamed1 | ||||
| 26335 | 0 aa hypothetical protein | |||
| 26340 | M | M.StyR64ORFAP (100% identity) | M.Eco3936ORF26340P | |
| 26345 | 73 aa hypothetical protein | |||
| plasmid unnamed4 | ||||
| 27115 | 73 aa hypothetical protein | |||
| 27120 | M | M.EcoT33ORF25390P (99% identity) | M.Eco3936ORF27120P | |
| 27125 | 0 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21190 | GTPase | |||
| 21195 | R | Ssp28760MrrP (100% identity) | Eco3936MrrP | |
| 21200 | type I restriction-modification system | |||