Rhizobium etli 8C-3 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Rhizobium etli 8C-3 RM systems
Ref: Bustos,P. et al. unpublished
REBASE ref # 23898
| Sequence length: | GenBank #: | |
| Chromosome: | 4,186,145 bp | CP017241 |
| plasmid pRsp8C3a: | 430,631 bp | CP017242 |
| plasmid pRsp8C3b: | 438,379 bp | CP017243 |
REBASE acronym: Ret8C3
Org_num: 22005
All begin AM571_CH, AM571_PA, AM571_PB
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2428 | 391 aa hypothetical protein | |||
| 2429 | R | Atu22ORF22068P (96% identity) | Ret8C3ORF2431P | |
| 2430 | S | S.CdaTAD1ORF4985P (61% identity) | S.Ret8C3ORF2431P | |
| 2431 | M | M.Atu22ORF22068P (92% identity) | M.Ret8C3ORF2431P | |
| 2432 | DEAD-like helicase protein | |||
| plasmid pRsp8C3a | ||||
| 84 | helix-turn-helix domain-containing protein | |||
| 85 | M | M.ByuWBAH30ORF38270P (74% identity) | M.Ret8C3ORF85P | |
| 86 | S | S.Dac2973ORF1334P (42% identity) | S.Ret8C3ORF85P | |
| 87 | R | Smeml45ORF9525P (75% identity) | Ret8C3ORF85P | |
| 88 | 234 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1415 | 67 aa hypothetical protein | |||
| 1416 | M | M.Rsp4ORFBP (76% identity) | M.Ret8C3ORF1416P | |
| 1417 | phage primase/helicase protein | |||
| 3329 | phage late control GPD protein | |||
| 3330 | M | M.Rsu1592aORF14155P (89% identity) | M.Ret8C3ORF3330P | |
| 3331 | 81 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pRsp8C3b | ||||
| 19 | 126 aa hypothetical protein | |||
| 20 | R | Ret512ORFEP (100% identity) | Ret8C3ORF21P | |
| 21 | M | M.Ret512ORFEP (100% identity) | M.Ret8C3ORF21P | |
| 22 | 219 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1032 | antibiotic biosynthesis monooxygenase protein | |||
| 1033 | M | M.RgaM101ORF12155P (98% identity) | GANTC | M.Ret8C3ORF1033P |
| 1034 | HAD superfamily hydrolase protein | |||