Escherichia coli S56 |
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Putative Escherichia coli S56 RM systems
Ref: Jiang,J. et al. unpublished
REBASE ref # 23554
| Sequence length: | GenBank #: | |
| Chromosome: | 4,740,150 bp | CP010242 |
| plasmid A: | 131,504 bp | CP010243 |
| plasmid B: | 113,250 bp | CP010244 |
REBASE acronym: EcoS56
Org_num: 21973
All begin RG73_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8975 | alcohol dehydrogenase | |||
| 8985 | R | Ecost64ORF20060P (100% identity) | EcoS56ORF8995P | |
| 8990 | S | S.Ecost64ORF20060P (100% identity) | S.EcoS56ORF8995P | |
| 8995 | M | 81 aa hypothetical protein | M.EcoS56ORF8995BP | |
| 9000 | transposase | |||
| 9005 | M | M.EcoH227ORFFP (79% identity) | M.EcoS56ORF8995AP | |
| 9010 | restriction methylase | |||
| plasmid A | ||||
| 23840 | transposase | |||
| 23845 | R | EcoBCCORF33230P (60% identity) | EcoS56ORF23845P | |
| 23850 | membrane protein | |||
| plasmid B | ||||
| 24480 | transposase | |||
| 24485 | R | Efe41C20ORF22770P (99% identity) | EcoS56ORF24500P | |
| 24490 | membrane protein | |||
| 24495 | S | S.Pda904681ORFBP (47% identity) | S.EcoS56ORF24500P | |
| 24500 | M | M.Eco5630ORF26280P (99% identity) | M.EcoS56ORF24500P | |
| 24505 | 63 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3555 | Fis family transcriptional regulator | |||
| 3560 | M | M.SflWW1ORF2205P (100% identity) | ATGCAT | M.EcoS56ORF3560P |
| 3565 | 59 aa hypothetical protein | |||
| 4130 | ribulose-phosphate 3-epimerase | |||
| 4135 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoS56DamP |
| 4140 | cell division protein DamX | |||
| 11235 | 162 aa hypothetical protein | |||
| 11240 | M | M.EcoW102ORF22410P (100% identity) | GATC | M.EcoS56ORF11240P |
| 11245 | LexA family transcriptional regulator | |||
| 14275 | 75 aa hypothetical protein | |||
| 14280 | M | M.SflFF67ORF14530P (99% identity) | GATC | M.EcoS56ORF14280P |
| 14285 | endonuclease | |||
| 19930 | multidrug DMT transporter | |||
| 19935 | V | V.SsoSE61DcmP (100% identity) | V.EcoS56DcmP | |
| 19940 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoS56DcmP |
| 19945 | hydrolase | |||
| 22165 | protein ninE | |||
| 22170 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoS56ORF22170P |
| 22175 | P21 prophage-derived protein NinB | |||
| plasmid B | ||||
| 24365 | 76 aa hypothetical protein | |||
| 24370 | M | M.Ecosa7ORFDP (99% identity) | GATC | M.EcoS56ORF24370P |
| 24375 | Uncharacterized protein | |||