Escherichia coli D5 |
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Putative Escherichia coli D5 RM systems
Ref: Jiang,J. et al. unpublished
REBASE ref # 23554
| Sequence length: | GenBank #: | |
| Chromosome: | 4,817,460 bp | CP010145 |
| plasmid A: | 112,874 bp | CP010146 |
REBASE acronym: EcoD5
Org_num: 21868
All begin RG38_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19365 | 61 aa hypothetical protein | |||
| 19370 | S | S.Ecostr10ORF18570P (100% identity) | S.EcoD5ORF19375P | |
| 19375 | M | M.Ecostr10ORF18570P (100% identity) | M.EcoD5ORF19375P | |
| 19380 | 60 aa hypothetical protein | |||
| plasmid A | ||||
| 23885 | membrane protein | |||
| 23890 | R | EcoS321ORF25465P (100% identity) | EcoD5ORF23900P | |
| 23895 | S | S.EcoS321ORF25465P (96% identity) | S.EcoD5ORF23900P | |
| 23900 | M | M.EcoS321ORF25465P (100% identity) | M.EcoD5ORF23900P | |
| 23905 | antitoxin | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 810 | 75 aa hypothetical protein | |||
| 815 | M | M.KpnK41ORF17960P (100% identity) | GATC | M.EcoD5ORF815P |
| 820 | endonuclease | |||
| 6650 | multidrug DMT transporter | |||
| ??? | V | V.EcoO146DcmP (100% identity) | V.EcoD5DcmP | |
| 6660 | M | M.SflN116DcmP (100% identity) | CCWGG | M.EcoD5DcmP |
| 6665 | hydrolase | |||
| 7600 | Presumed portal vertex protein | |||
| 7605 | M | M.Ecoww7ORF20P (100% identity) | TGGCCA | M.EcoD5ORF7605P |
| 7610 | R | Ecoppa10ORF13455P (100% identity) | TGGCCA | EcoD5ORF7605P |
| 7615 | Replication gene A protein | |||
| 10235 | SsrA-binding protein | |||
| 10240 | R | Sso8033ORF3755P (99% identity) | CCWGG | EcoD5ORF10245P |
| 10245 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.EcoD5ORF10245P |
| 10250 | 257 aa hypothetical protein | |||
| 10380 | holin | |||
| 10385 | M | M.Ecoppa10ORF10420P (100% identity) | M.EcoD5ORF10385P | |
| 10390 | phage protein | |||
| 10430 | LexA family transcriptional regulator | |||
| 10435 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoD5ORF10435P |
| 10440 | 162 aa hypothetical protein | |||
| 13880 | Fis family transcriptional regulator | |||
| 13885 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoD5ORF13885P |
| 13890 | 59 aa hypothetical protein | |||
| 14450 | ribulose-phosphate 3-epimerase | |||
| 14455 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoD5DamP |
| 14460 | cell division protein DamX | |||
| 19405 | alkaline phosphatase | |||
| 19410 | RM | Ecoppa10ORF1735P (100% identity) | ACCYAC | EcoD5ORF19410P |
| 19415 | DNA repair protein | |||
| 22790 | P21 prophage-derived protein NinB | |||
| 22795 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoD5ORF22795P |
| 22800 | protein ninE | |||
| plasmid A | ||||
| 24225 | 61 aa hypothetical protein | |||
| 24230 | M | M.Eco5L08ORF20240P (93% identity) | M.EcoD5ORF24230P | |
| 24245 | 63 aa hypothetical protein | |||