Escherichia coli C4 |
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Putative Escherichia coli C4 RM systems
Ref: Jiang,J. et al. unpublished
REBASE ref # 23554
Complete sequence: 4,990,476 bp
GenBank #: CP010121
REBASE acronym: EcoC4
Org_num: 21858
All begin RG27_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 20165 | transcription factor | |||
| 20170 | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.EcoC4ORF20170P |
| 20175 | S | S.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | S.EcoC4ORF20170P |
| 20180 | 218 aa hypothetical protein | |||
| 20185 | Appr-1-p processing protein | |||
| 20190 | R | Sbo49812IP (100% identity) | EcoC4ORF20190P | |
| 20195 | metal-dependent hydrolase | |||
| 22455 | 699 aa hypothetical protein | |||
| 22460 | M | M.Ecos135ORF4680P (100% identity) | M.EcoC4ORF22460P | |
| 22465 | S | S.Ecos135ORF4680P (100% identity) | S.EcoC4ORF22460P | |
| 22470 | R | EcoTHYM1ORF20980P (99% identity) | EcoC4ORF22460P | |
| 22475 | membrane protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3250 | cell division protein DamX | |||
| 3255 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC4DamP |
| 3260 | ribulose-phosphate 3-epimerase | |||
| 3825 | 59 aa hypothetical protein | |||
| 3830 | M | M.Fnu048ORFDP (100% identity) | ATGCAT | M.EcoC4ORF3830P |
| 3835 | Fis family transcriptional regulator | |||
| 8565 | 162 aa hypothetical protein | |||
| 8570 | M | M.Ecos135ORF19235P (100% identity) | GATC | M.EcoC4ORF8570P |
| 8575 | LexA family transcriptional regulator | |||
| 8595 | antitermination protein | |||
| 8600 | M | M.EcoLR03ORF33110P (100% identity) | M.EcoC4ORF8600P | |
| 8605 | Uncharacterized protein | |||
| 10610 | P21 prophage-derived protein NinB | |||
| 10615 | M | M.Eco017ORF7735P (100% identity) | GATC | M.EcoC4ORF10615P |
| 10620 | protein ninE | |||
| 11060 | hydrolase | |||
| 11065 | M | M.Ecos135DcmP (100% identity) | CCWGG | M.EcoC4DcmP |
| 11070 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.EcoC4DcmP |
| 11075 | multidrug DMT transporter | |||
| 22115 | holin | |||
| 22120 | M | M.EcoUM1886ORF23090P (100% identity) | M.EcoC4ORF22120P | |
| 22125 | phage protein | |||
| 22155 | LexA family transcriptional regulator | |||
| 22160 | M | M.EcoUM1886ORF23130P (100% identity) | GATC | M.EcoC4ORF22160P |
| 22165 | 162 aa hypothetical protein | |||
| 22725 | RM | EcoTHYM1ORF21205P (100% identity) | EcoC4ORF22725P | |
| 22730 | helicase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 16920 | endonuclease | |||
| 16925 | M | M.EcoR47ORF14200P (100% identity) | GATC | M.EcoC4ORF16925P |
| 16930 | 75 aa hypothetical protein | |||