Escherichia coli 9000 |
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Putative Escherichia coli 9000 RM systems
Ref: Shaaban,S. et al. unpublished
REBASE ref # 23582
| Sequence length: | GenBank #: | |
| Chromosome: | 5,516,496 bp | CP018252 |
| plasmid pO157: | 95,229 bp | CP018253 |
REBASE acronym: Eco9000
Org_num: 21920
All begin BFL16_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 29690 | endoribonuclease SymE | |||
| 29695 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.Eco9000ORF29700P |
| 29700 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.Eco9000ORF29700P |
| 29705 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | Eco9000ORF29700P |
| 29710 | DUF262 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 27990 | 65 aa hypothetical protein | |||
| ??? | M | M.Ecos1613ORF25555P (100% identity) | M.Eco9000ORF27995P | |
| 28005 | Eae protein | |||
| 29355 | transposase | |||
| 29360 | R | Ecos1613ORF26795P (100% identity) | Eco9000ORF29360P | |
| 29365 | N-acetylneuraminic acid mutarotase | |||
| 29395 | DEAD/DEAH box helicase | |||
| 29400 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | Eco9000ORF29400P |
| 11080 | DUF1737 domain-containing protein | |||
| 11090 | M | M.EcoZ910ORF13805P (100% identity) | M.Eco9000ORF11090P | |
| 11095 | TrmB family transcriptional regulator | |||
| 11115 | 90 aa hypothetical protein | |||
| 11120 | R | EcoZ910ORF13770P (100% identity) | GCCGGC | Eco9000ORF11125P |
| 11125 | M | M.EcoZ910ORF13770P (100% identity) | GCCGGC | M.Eco9000ORF11125P |
| 11130 | epoxyqueuosine reductase QueH | |||
| 11790 | DUF1737 domain-containing protein | |||
| 11810 | M | M.EcosPA8ORF27255P (100% identity) | M.Eco9000ORF11810P | |
| 11815 | TrmB family transcriptional regulator | |||
| 17805 | phage antirepressor Ant | |||
| ??? | M | M.EcoX21ORFCP (100% identity) | GATC | M.Eco9000ORF17810P |
| 17820 | protein ninB | |||
| 14195 | drug/metabolite exporter YedA | |||
| 14200 | V | V.EcosPA8DcmP (100% identity) | V.Eco9000DcmP | |
| 14205 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco9000DcmP |
| 14210 | phosphohydrolase | |||
| 15145 | NinE family protein | |||
| 15150 | M | M.Eph2851ORFAP (100% identity) | GATC | M.Eco9000ORF15150P |
| 15155 | recombination protein NinB | |||
| 17810 | NinE family protein | |||
| 17815 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco9000ORF17815P |
| 17820 | recombination protein NinB | |||
| 23115 | DNA-binding transcriptional regulator Fis | |||
| 23120 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.Eco9000ORF23120P |
| 23125 | DUF2556 family protein | |||
| 23670 | ribulose-phosphate 3-epimerase | |||
| 23675 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco9000DamP |
| 23680 | cell division protein DamX | |||
| plasmid pO157 | ||||
| 31275 | 101 aa hypothetical protein | |||
| 30400 | M | M.EcosPA8ORF27775P (100% identity) | M.Eco9000ORF30400P | |
| 30405 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 29675 | DUF1127 domain-containing protein | |||
| 29680 | R | Ecos1613GmrSP (100% identity) | Eco9000GmrS2P | |
| 29685 | R | EcosPA8GmrSDP (55% identity) | Eco9000GmrD2P | |
| 29690 | endoribonuclease SymE | |||
| 29680 | 293 aa hypothetical protein | |||
| ??? | R | EcoX21GmrDP (100% identity) | Eco9000GmrDP | |
| 29690 | 113 aa hypothetical protein | |||