Bacteroides fragilis YCH46 |
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Putative Bacteroides fragilis YCH46 RM systems
Ref: Kuwahara,T. et al. Proc. Natl. Acad. Sci. U.S.A. 101 (41), 14919-14924 (2004)
REBASE ref # 8730
Complete sequence: 5,277,274 bp
GenBank #: AP006841 (NC_006347)
REBASE acronym: BfrY
Org_num: 4002
All begin BF
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4219 | 164 aa hypothetical protein | |||
| ??? | M | M.BfrBOB25ORF19485P (98% identity) | M.BfrYORF4221P | |
| 4223 | 116 aa conserved hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 638 | 684 aa conserved hypothetical protein | |||
| 639 | M | M.Bfr89ORF6575P (100% identity) | CAGCTG | M.BfrYORF639P |
| 640 | 50 aa hypothetical protein | |||
| 1348 | conserved protein found in conjugate transposon | |||
| 1349 | M | M.PdiS2PDORF16400P (100% identity) | ACGCGT | M.BfrYORF1349P |
| 1350 | conserved protein found in conjugate transposon | |||
| 1979 | ATPase involved in DNA repair | |||
| 1980 | RM | Bfr89ORF12610P (100% identity) | BfrYORF1980P | |
| 1981 | C | C.Bfr89ORF12610P (100% identity) | C.BfrYORF1980P | |
| 1982 | 171 aa conserved hypothetical protein | |||
| 2469 | 139 aa hypothetical protein | |||
| 2470 | M | M.BfrIHMA4ORF22795P (100% identity) | M.BfrYORF2470P | |
| 2471 | 116 aa hypothetical protein | |||
| 2800 | 241 aa hypothetical protein | |||
| 2801 | M | M.PvuC06ORF1788P (100% identity) | M.BfrYORF2801P | |
| 2802 | 256 aa hypothetical protein | |||
| 3007 | 55 aa hypothetical protein | |||
| 3008 | RM | Bca474ORF19940P (100% identity) | BfrYORF3008P | |
| ??? | 310 aa hypothetical protein | |||
| 3008 | type IIS restriction/modification | |||
| ??? | RM | 310 aa hypothetical protein | BfrYORF3009P | |
| 3012 | serine type site-specific recombinase | |||
| 3680 | 165 aa conserved hypothetical protein | |||
| 3681 | M | M.Bfr4096BORF17505P (100% identity) | CCWGG | M.BfrYORF3681P |
| 3682 | R | Bfr4096BORF17505P (100% identity) | CCWGG | BfrYORF3681P |
| 3683 | V | V.Bfr450ORF22540P (100% identity) | V.BfrYORF3681P | |
| 3684 | 56 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1141 | ribosomal large subunit pseudouridine synthase | |||
| 1142 | R | Bfr13ORF9285P (100% identity) | BfrYORF1142P | |
| 1143 | M | M.PmeBin12ORFEP (100% identity) | M.BfrYORF1142P | |
| 1144 | alpha-xylosidase | |||
| 1155 | 72 aa hypothetical protein | |||
| 1156 | R | Bfr89ORF8955P (99% identity) | BfrYORF1158P | |
| 1157 | 360 aa conserved hypothetical protein | |||
| 1158 | M | M.Bfr89ORF8955P (100% identity) | M.BfrYORF1158P | |
| 1159 | C | C.Bfr89ORF8955P (100% identity) | C.BfrYORF1158P | |
| 1160 | 416 aa hypothetical protein | |||