Limnothrix species P13C2 |
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Putative Limnothrix species P13C2 RM systems
Ref: Tan,B. et al. unpublished
REBASE ref # 23012
GenBank #: MBRF00000000
REBASE acronym: LspP13C2
Org_num: 21556
All begin BCR12_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 16125 | deacylase | |||
| 16130 | M | M.Mvi102ORF14650P (92% identity) | M.LspP13C2ORF16130P | |
| 16135 | S | S.Mae9443ORF5520036P (90% identity) | S.LspP13C2ORF16130P | |
| 16140 | 159 aa hypothetical protein | |||
| 12540 | precorrin-4 C(11)-methyltransferase | |||
| 12545 | M | M.Ssp6312ORF891P (87% identity) | M.LspP13C2ORF12545P | |
| 12550 | hydroxyacid dehydrogenase | |||
| 12555 | DNA polymerase subunit beta | |||
| 12560 | S | S.TspPSB1VII (42% identity) | S.LspP13C2ORF12545P | |
| 12565 | 251 aa hypothetical protein | |||
| 12570 | molybdopterin-guanine dinucleotide biosynthesis | |||
| 12575 | 149 aa hypothetical protein | |||
| 12580 | 252 aa hypothetical protein | |||
| 12585 | 198 aa hypothetical protein | |||
| 12590 | R | Sli6715ORF5345P (78% identity) | LspP13C2ORF12545P | |
| 12595 | transcription-repair coupling factor | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 16490 | 93 aa hypothetical protein | |||
| 16495 | M | M.CspC11ORF28415P (66% identity) | M.LspP13C2ORF16495P | |
| 16500 | R | CspC11ORF28415P (65% identity) | LspP13C2ORF16495P | |
| 16505 | 99 aa hypothetical protein | |||
| 13270 | 253 aa hypothetical protein | |||
| ??? | M | M.BanI (58% identity) | GGYRCC | M.LspP13C2ORFAP |
| 13275 | 83 aa hypothetical protein | |||
| 18655 | isoleucine--tRNA ligase | |||
| 18660 | R | FspJSC11ORF3231P (50% identity) | GGWCC | LspP13C2ORF18665P |
| 18665 | M | M.Lsp902ORF37670P (60% identity) | GGWCC | M.LspP13C2ORF18665P |
| 18670 | 125 aa hypothetical protein | |||
| 8505 | acetyltransferase | |||
| 8510 | R | Lsp412ORF7935P (91% identity) | GCATGC | LspP13C2ORF8515P |
| 8515 | M | M.TspTB121ORFIP (88% identity) | GCATGC | M.LspP13C2ORF8515P |
| 8520 | 269 aa hypothetical protein | |||
| 12375 | M | M.PspAB48ORF20440P (29% identity) | GGWCC | M.LspP13C2ORF12375P |
| 12380 | fatty-acid synthase | |||
| 17580 | DNA gyrase subunit B | |||
| 17585 | M | CspNUC1ORF20225P (42% identity) | M.LspP13C2ORF17585P | |
| 17590 | 63 aa hypothetical protein | |||
| 440 | UDP-N-acetylmuramoylalanine--D-glutamate ligase | |||
| 445 | RM | Pru108ORF4801P (50% identity) | LspP13C2ORF445P | |
| 450 | imidazoleglycerol-phosphate dehydratase | |||
| 15235 | dihydroxy-acid dehydratase | |||
| 15240 | M | M2.PmeBin319ORFBP (49% identity) | GATC | M.LspP13C2ORF15240P |
| 15245 | 63 aa hypothetical protein | |||
| 15265 | 252 aa hypothetical protein | |||
| 15270 | M | M.OspAP17ORF9985P (55% identity) | CGATCG | M.LspP13C2ORF15270P |
| 15275 | 520 aa hypothetical protein | |||
| 12015 | GTP-binding protein | |||
| 12020 | M | M.Cbr22ORF22360P (29% identity) | GGCC | M.LspP13C2ORF12020P |
| 12025 | 299 aa hypothetical protein | |||
| 15415 | hydroxyacid dehydrogenase | |||
| 15420 | RM | Csp8801ORF1662P (52% identity) | LspP13C2ORF15420P | |
| 15425 | 244 aa hypothetical protein | |||