Prevotella intermedia ATCC 25611F |
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Putative Prevotella intermedia ATCC 25611F RM systems
Ref: Johnston,C.D. and Rittling,S.R. unpublished
REBASE ref # 25088
| Sequence length: | GenBank #: | |
| chromosome I: | 1,965,935 bp | CP019300 |
| chromosome II: | 708,235 bp | CP019301 |
REBASE acronym: Pin25611F
Org_num: 3857
All begin BWX39_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 7760 | site-specific integrase | |||
| ??? | S | S2.PinZORFCP (56% identity) | S4.Pin25611FORF7790P | |
| 7770 | S | S3.PinZORFCP (100% identity) | S3.Pin25611FORF7790P | |
| 7775 | S | S.Pin25611ORFAP (46% identity) | S2.Pin25611FORF7790P | |
| 7780 | S | S1.Pin13070III (48% identity) | S1.Pin25611FORF7790P | |
| 7785 | DNA-binding protein | |||
| 7790 | M | M.PinZORFCP (100% identity) | M.Pin25611FORF7790P | |
| 7795 | 212 aa hypothetical protein | |||
| 7800 | R | PinZORFCP (100% identity) | Pin25611FORF7790P | |
| ??? | C | C.PinZORFCP (100% identity) | C.Pin25611FORF7790P | |
| 7810 | peptidase M6 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 1340 | prolipoprotein diacylglyceryl transferase | |||
| 1345 | M | M.PinZORFFP (100% identity) | GAATTC | M.Pin25611FORF1345P |
| 1350 | R | PinZORFFP (100% identity) | Pin25611FORF1345P | |
| 1355 | 74 aa hypothetical protein | |||
| 1640 | 259 aa hypothetical protein | |||
| 1645 | C | C.PinZORFEP (100% identity) | C.Pin25611FIIIP | |
| 1650 | M | M.PinZORFEP (100% identity) | GCWGC | M.Pin25611FIII |
| 1655 | ATP-binding protein | |||
| 4125 | 4-hydroxy-3-methylbut-2-enyl diphosphate | |||
| 4130 | M | M.PinZORFBP (100% identity) | GATC | M.Pin25611FII |
| 4135 | R | PinZORFBP (100% identity) | GATC | Pin25611FIIP |
| 4140 | 293 aa hypothetical protein | |||
| chromosome II | ||||
| 9675 | R | PinZORFHP (100% identity) | GGATG | Pin25611FIP |
| 9680 | M | M1.PinZORFHP (100% identity) | GGATG | M1.Pin25611FI |
| 9685 | M | M2.PinZORFHP (100% identity) | GGATG | M2.Pin25611FI |
| 9690 | DUF4295 domain-containing protein | |||
| 11215 | 220 aa hypothetical protein | |||
| 11220 | S | S.PinZORFGP (100% identity) | GAGNNNNTAC | S.Pin25611FIV |
| 11225 | M | M.PinZORFGP (100% identity) | GAGNNNNTAC | M.Pin25611FIV |
| 11230 | C | C.Pma19339ORFCP (100% identity) | C.Pin25611FIVP | |
| 11235 | 102 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome II | ||||
| 9470 | 70 aa hypothetical protein | |||
| 9475 | R | PinZMcrBP (100% identity) | Pin25611FMcrBP | |
| 9480 | R | PinZMcrCP (100% identity) | Pin25611FMcrCP | |
| 9485 | 77 aa hypothetical protein | |||