Vibrio cholerae C5 |
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Putative Vibrio cholerae C5 RM systems
Ref: Hu,D. et al. Proc. Natl. Acad. Sci. U.S.A. (2016) In press
REBASE ref # 23207
| Sequence length: | GenBank #: | |
| chromosome 1: | 2,996,195 bp | CP013301 |
| chromosome 2: | 1,105,843 bp | CP013302 |
REBASE acronym: VchC5
Org_num: 3498
All begin ASZ80_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1758 | 706 aa hypothetical protein | |||
| 1759 | R | VspNIH41ORF1746P (100% identity) | AAGNNNNNNCATC | VchC5ORF1763P |
| 1760 | 663 aa hypothetical protein | |||
| 1761 | 470 aa hypothetical protein | |||
| 1762 | S | S.VspNIH41ORF1746P (99% identity) | AAGNNNNNNCATC | S.VchC5ORF1763P |
| 1763 | M | M.VspNIH41ORF1746P (100% identity) | AAGNNNNNNCATC | M.VchC5ORF1763P |
| 1764 | 687 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 2646 | ribulose-phosphate 3-epimerase | |||
| 2647 | M | M.VspNIH41DamP (100% identity) | GATC | M.VchC5DamP |
| 2648 | DamX-like protein | |||
| chromosome 2 | ||||
| 3001 | GMP reductase | |||
| ??? | M | M.VspNIH41ORF700P (100% identity) | RCCGGY | M.VchC5ORF3002P |
| 3003 | 638 aa hypothetical protein | |||
| 3338 | 64 aa hypothetical protein | |||
| 3339 | M | M.VspNIH41ORF3529P (94% identity) | M.VchC5ORF3339P | |
| 3340 | 44 aa hypothetical protein | |||