Propionibacterium freudenreichii JS2 |
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Putative Propionibacterium freudenreichii JS2 RM systems
Ref: Deptula,P.,Laine,P. et al. unpublished
REBASE ref # 22611
Complete sequence: 2,655,351 bp
GenBank #: LT576032
REBASE acronym: PfrJS2
Org_num: 20452
All begin PFR_JS2_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 246 | DNA protecting protein DprA | |||
| 247 | R | PfrJS8IP (100% identity) | ATCNNNNNGTCG | PfrJS2IP |
| 248 | S | S.PfrJS8I (100% identity) | ATCNNNNNGTCG | S.PfrJS2I |
| ??? | M | M.PfrJS8I (100% identity) | ATCNNNNNGTCG | M.PfrJS2I |
| 251 | zinc-binding sorbitol dehydrogenase | |||
| 1296 | Transcriptional regulator, TetR family | |||
| 1297 | M | M.PfrJSII (100% identity) | AGTNNNNNNCTT | M.PfrJS2II |
| 1298 | S | S.PfrPBF01ORFEP (100% identity) | AGTNNNNNNCTT | S.PfrJS2II |
| 1299 | 97 aa Hypothetical protein | |||
| 1300 | Plasmid maintenance system antidote protein, | |||
| ??? | R | PfrJSIIP (100% identity) | AGTNNNNNNCTT | PfrJS2IIP |
| 1302 | TIR protein | |||
| 2112 | ABC transporter multidrug efflux pump, fused | |||
| 2113 | M | M.PfrPBF04ORFDP (99% identity) | GATNNNNNNTTT | M.PfrJS2III |
| ??? | S | S.PfrJS7aIII (64% identity) | GATNNNNNNTTT | S.PfrJS2III |
| 2115 | R | PfrPBF01ORFBP (99% identity) | GATNNNNNNTTT | PfrJS2IIIP |
| 2116 | DNA polymerase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1976 | SecB-like chaperone Rv1957 | |||
| 1977 | RM | PfrPBF12ORFAP (99% identity) | CTTCNAC | PfrJS2IV |
| 1978 | Transposase of ISAar20, ISL3 family | |||
| 2133 | 111 aa Hypothetical protein | |||
| 2134 | R | PfrUF1ORFAP (100% identity) | PfrJS2ORF2134P | |
| 2135 | IS1096, TnpA protein | |||
| 2249 | DNA processing protein | |||
| ??? | M | M.Pfr19024ORF63P (99% identity) | GCCGGC | M.PfrJS2V |
| 2251 | 900 aa Hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1857 | Transporter, anaerobic C4-dicarboxylate uptake | |||
| 1858 | R | PfrTL19ORFBP (99% identity) | PfrJS2ORF1858P | |
| 1859 | 99 aa Hypothetical protein | |||