Propionibacterium freudenreichii JS23 |
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Putative Propionibacterium freudenreichii JS23 RM systems
Ref: Deptula,P.,Laine,P. et al. unpublished
REBASE ref # 22611
Complete sequence: 2,630,698 bp
GenBank #: LT618793
REBASE acronym: PfrJS23
Org_num: 20476
All begin PFR_JS23_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 783 | RNA methyltransferase, TrmH family | |||
| ??? | M | M.PfrUF1IIIP (100% identity) | GAANNNNNNNCTT | M.PfrJS23ORF784P |
| 785 | Restriction system protein mrr | |||
| 786 | S | S.PfrUF1III (100% identity) | GAANNNNNNNCTT | S.PfrJS23ORF784P |
| 787 | R | PfrUF1IIIP (100% identity) | GAANNNNNNNCTT | PfrJS23ORF784P |
| 788 | 101 aa Hypothetical protein | |||
| 1998 | PF12952 domain protein | |||
| 1999 | M | Type I restriction-modification system DNA | M.PfrJS23ORF1999P | |
| 2000 | DNA restriction-modification system, DNA | |||
| 2176 | PltJ | |||
| 2177 | M | M.PfrUF1ORF10885P (100% identity) | M.PfrJS23ORF2177P | |
| 2178 | S | S1.PfrUF1ORF10885P (89% identity) | S1.PfrJS23ORF2177P | |
| 2179 | S | S2.PfrUF1ORF10885P (52% identity) | S2.PfrJS23ORF2177P | |
| 2180 | R | PfrUF1ORF10885P (100% identity) | PfrJS23ORF2177P | |
| 2181 | DNA polymerase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1964 | SecB-like chaperone Rv1957 | |||
| 1965 | RM | PfrPBF12ORFAP (100% identity) | CTTCNAC | PfrJS23II |
| 1966 | Transposase of ISAar20, ISL3 family | |||
| 2187 | IS1096, TnpA protein | |||
| 2188 | R | PfrUF1ORFAP (100% identity) | PfrJS23ORF2188P | |
| 2189 | 111 aa Hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1999 | Type I restriction-modification system DNA | |||
| 2000 | M | M.PfrUF1I (100% identity) | AGCAGY | M.PfrJS23I |
| 2001 | R | PfrUF1IP (100% identity) | AGCAGY | PfrJS23IP |
| 2002 | PF12952 domain protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | Restriction endonuclease | |||
| 785 | R | PfrUF1MrrP (100% identity) | PfrJS23MrrP | |
| 786 | Type I restriction modification DNA specificity | |||
| 1904 | Transporter, anaerobic C4-dicarboxylate uptake | |||
| ??? | R | PfrUF1ORF9580P (100% identity) | PfrJS23ORF1905P | |
| 1906 | 99 aa Hypothetical protein | |||
| 1937 | pyruvate, phosphate dikinase regulatory | |||
| ??? | R | PfrTL29Mrr3P (100% identity) | PfrJS23Mrr2P | |
| 1939 | MATE efflux family protein | |||