Propionibacterium freudenreichii JS17 |
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Putative Propionibacterium freudenreichii JS17 RM systems
Ref: Deptula,P.,Laine,P. et al. unpublished
REBASE ref # 22611
Complete sequence: 2,755,516 bp
GenBank #: LT618789
REBASE acronym: PfrJS17
Org_num: 20473
All begin PFR_JS17-1_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 892 | RNA methyltransferase, TrmH family | |||
| 893 | M | M.PfrTL29I (100% identity) | GAANNNNNNNCTT | M.PfrJS17I |
| 894 | Restriction system protein mrr | |||
| 895 | S | S.PfrUF1III (100% identity) | GAANNNNNNNCTT | S.PfrJS17I |
| 896 | R | PfrUF1IIIP (100% identity) | GAANNNNNNNCTT | PfrJS17IP |
| 897 | 101 aa Hypothetical protein | |||
| 2251 | ABC transporter multidrug efflux pump, fused | |||
| 2252 | M | M.PfrJS17aORF2251P (100% identity) | M.PfrJS17ORF2252P | |
| ??? | S | S1.PfrJS17aORF2251P (100% identity) | S1.PfrJS17ORF2252P | |
| ??? | S | S2.PfrJS17aORF2251P (100% identity) | S2.PfrJS17ORF2252P | |
| 2256 | R | PfrUF1ORF10885P (100% identity) | PfrJS17ORF2252P | |
| 2257 | DNA polymerase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2072 | 75 aa Hypothetical protein | |||
| ??? | M | M.PfrJS17aORF2072P (100% identity) | M.PfrJS17ORF2073P | |
| 2075 | 108 aa Hypothetical protein | |||
| 2276 | 111 aa Hypothetical protein | |||
| 2277 | R | PfrUF1ORFAP (100% identity) | C | PfrJS17ORF2277P |
| 2278 | Transposase of ISAar20, ISL3 family | |||
| 2324 | HipA domain protein | |||
| ??? | RM | PfrJS17aORF2325P (100% identity) | PfrJS17ORF2325P | |
| 2326 | 232 aa Hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 271 | Integrase, catalytic region | |||
| 272 | R | PfrJS17aIIP (100% identity) | AGCAGY | PfrJS17IIP |
| 273 | M | M.PfrUF1I (100% identity) | AGCAGY | M.PfrJS17II |
| 274 | Type I restriction-modification system DNA | |||
| 2326 | 232 aa Hypothetical protein | |||
| 2327 | R | PfrJS17aORF2328P (100% identity) | PfrJS17ORF2328P | |
| 2328 | M | M.PfrJS17aORF2328P (100% identity) | M.PfrJS17ORF2328P | |
| 2329 | 80 aa Hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 893 | Type I restriction-modification system, M | |||
| 894 | R | PfrUF1MrrP (100% identity) | PfrJS17MrrP | |
| 895 | Type I restriction modification DNA specificity | |||
| 1975 | Transporter, anaerobic C4-dicarboxylate uptake | |||
| ??? | R | PfrJS17aORF1975AP (100% identity) | PfrJS17ORF1976AP | |
| ??? | R | PfrJS17aORF1975BP (100% identity) | PfrJS17ORF1976BP | |
| 1979 | 99 aa Hypothetical protein | |||
| 2011 | pyruvate, phosphate dikinase regulatory | |||
| 2012 | R | PfrJS17aMrr2P (100% identity) | PfrJS17Mrr2P | |
| 2013 | MATE efflux family protein | |||