Nodularia spumigena CENA596 |
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Putative Nodularia spumigena CENA596 RM systems
Ref: Popin,R.V. et al. Genome Announc 4 (3) (2016)
REBASE ref # 22184
Contig set: 5,189,679 bp
GenBank #: LWAJ00000000 (NZ_LWAJ00000000)
REBASE acronym: Nsp596
Org_num: 20372
All begin A2T98_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 12530 | 470 aa hypothetical protein | |||
| 12535 | M | M.Cbr22ORF33370P (91% identity) | M.Nsp596ORF12535P | |
| 12540 | crossover junction endodeoxyribonuclease RuvC | |||
| 21870 | alpha/beta hydrolase | |||
| 21875 | R | Nsp0039ORFEP (52% identity) | Nsp596ORF21895P | |
| 21880 | S | S.LspHIORF13440P (33% identity) | S.Nsp596ORF21895P | |
| 21885 | Zeta toxin family protein | |||
| 21890 | 83 aa hypothetical protein | |||
| 21895 | M | M.Nsp0039ORFEP (93% identity) | M.Nsp596ORF21895P | |
| 21900 | 383 aa hypothetical protein | |||
| 20005 | 73 aa hypothetical protein | |||
| 20010 | C | C.Ncf36ORF19570P (73% identity) | C.Nsp596ORF20010P | |
| 20015 | 324 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7055 | M | M.Nsp9414ORF2726P (100% identity) | CGATCG | M.Nsp596ORF7055P |
| 7060 | membrane protease subunit, stomatin/prohibitin | |||
| 6580 | XRE family transcriptional regulator | |||
| 6585 | R | Nsp9414ORF50720P (97% identity) | RCATGY | Nsp596ORF6590P |
| 6590 | M | M.Nsp9414ORF50720P (97% identity) | RCATGY | M.Nsp596ORF6590P |
| 6595 | tryptophan--tRNA ligase | |||
| 4615 | nitrogenase reductase | |||
| 4620 | RM | Ael3563ORF9960P (94% identity) | Nsp596ORF4620P | |
| 4625 | 69 aa hypothetical protein | |||
| 12140 | transposase | |||
| 12145 | M | M.Nsp9414ORF25570P (97% identity) | TCCGGA | M.Nsp596ORF12145P |
| 12150 | 77 aa hypothetical protein | |||
| 13990 | cytochrome oxidase | |||
| 13995 | R | Nsp870ORF19225P (71% identity) | Nsp596ORF14000P | |
| 14000 | M | M.Ncf36ORF54310P (83% identity) | GGWCC | M.Nsp596ORF14000P |
| 14005 | alanine dehydrogenase | |||
| 16240 | flagellar assembly protein H | |||
| 16245 | RM | Nsp9414ORF10950P (97% identity) | Nsp596ORF16245P | |
| 16250 | 499 aa hypothetical protein | |||
| 1125 | 2-deoxyribose-5-phosphate aldolase | |||
| 1130 | M | M.CovORF3460P (80% identity) | M.Nsp596ORF1130P | |
| 1135 | 480 aa hypothetical protein | |||
| 12890 | 212 aa hypothetical protein | |||
| 12895 | R | Nsp9414ORF910P (100% identity) | CCTNAGG | Nsp596ORF12900P |
| 12900 | M | M.Nsp9414ORF910P (100% identity) | CCTNAGG | M.Nsp596ORF12900P |
| 12905 | ABC transporter permease | |||
| 8495 | 70 aa hypothetical protein | |||
| 8500 | M | M.Nsp0039ORFDP (93% identity) | CAGCTG | M.Nsp596ORF8500P |
| 8505 | alkaline phosphatase | |||
| 10655 | 95 aa hypothetical protein | |||
| ??? | RM | Nsp9414ORF5799P (38% identity) | Nsp596ORF10660P | |
| 10675 | sodium:proton antiporter | |||
| 2440 | NgoFVII family restriction endonuclease | |||
| 2445 | RM | Nsp926ORF16825P (69% identity) | Nsp596ORF2445P | |
| 2450 | 989 aa hypothetical protein | |||
| 5730 | 203 aa hypothetical protein | |||
| 5735 | M | M.Nsp0039ORF2154P (99% identity) | TTCGAA | M.Nsp596ORF5735P |
| 5740 | R | Ael3563ORF7905P (88% identity) | TTCGAA | Nsp596ORF5735P |
| 5745 | 63 aa hypothetical protein | |||
| 16920 | FAD-linked oxidase | |||
| 16925 | R | PamM71ORF8005P (78% identity) | CTGCAG | Nsp596ORF16930P |
| 16930 | M | M.Nsp9414ORF19140P (92% identity) | CTGCAG | M.Nsp596ORF16930P |
| 16935 | 107 aa hypothetical protein | |||
| 8370 | magnesium transporter | |||
| 8375 | RM | Psp001ORF4420P (61% identity) | Nsp596ORF8375P | |
| 8380 | SNARE associated Golgi family protein | |||
| 15050 | replication restart DNA helicase PriA | |||
| 15055 | M | M.Nsp9414ORF51370P (100% identity) | GDGCHC | M.Nsp596ORF15055P |
| 15060 | excinuclease ABC subunit C | |||
| 12950 | vioC monooxygenase | |||
| 12955 | M | M.CovORF2742P (97% identity) | GGWCC | M.Nsp596ORF12955P |
| 12960 | 255 aa hypothetical protein | |||
| 19470 | 160 aa hypothetical protein | |||
| 19475 | M | M.Nsp9414ORF21826P (98% identity) | GATC | M.Nsp596ORF19475P |
| 19480 | 68 aa hypothetical protein | |||
| 17910 | cell division protein FtsH | |||
| 17915 | RM | Nsp9414ORF20700P (98% identity) | Nsp596ORF17915P | |
| 17920 | 184 aa hypothetical protein | |||
| 20010 | XRE family transcriptional regulator | |||
| 20015 | R | Ncf36ORF19570P (79% identity) | CCANNNNNTGG | Nsp596ORF20015P |
| 20020 | XRE family transcriptional regulator | |||
| 20015 | 324 aa hypothetical protein | |||
| 20020 | M | M.Ncf36ORF19570P (81% identity) | CCANNNNNTGG | M.Nsp596ORF20020P |
| 20025 | 7,8-didemethyl-8-hydroxy-5-deazariboflavin | |||
| 15200 | 128 aa hypothetical protein | |||
| 15205 | RM | Dhe447ORF865P (77% identity) | CTGGAG | Nsp596ORF15205P |
| 15210 | lipid-A-disaccharide synthase | |||
| 4785 | DNA-binding protein | |||
| 4790 | M | M.Nsp0038ORF154P (96% identity) | GACNNNGTC | M.Nsp596ORF4790P |
| 4795 | R | Nsp0038ORF154P (99% identity) | GACNNNGTC | Nsp596ORF4790P |
| 4800 | C | C.Nsp0038ORF154P (100% identity) | C.Nsp596ORF4790P | |
| 4805 | 194 aa hypothetical protein | |||
| 7565 | addiction module antitoxin | |||
| 7570 | M | Nsp9414ORF46140P (39% identity) | M.Nsp596ORF7570P | |
| 7575 | 78 aa hypothetical protein | |||
| 19645 | amylo-alpha-1,6-glucosidase | |||
| 19650 | R | Nsp9414ORF11980P (100% identity) | GGCC | Nsp596ORF19660P |
| 19655 | 65 aa hypothetical protein | |||
| 19660 | M | M.Nsp0039ORF1163P (100% identity) | GGCC | M.Nsp596ORF19660P |
| 19665 | 72 aa hypothetical protein | |||
| 19820 | heme iron utilization protein | |||
| ??? | R | Nsp9414ORF11630P (88% identity) | GGYRCC | Nsp596ORF19830P |
| 19830 | M | M.Nsp9414ORF11630P (97% identity) | GGYRCC | M.Nsp596ORF19830P |
| 19835 | 265 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6200 | 565 aa hypothetical protein | |||
| 6205 | M | M.Ssp2875ORF29480P (68% identity) | M.Nsp596ORF6205P | |
| 6210 | R | AspWA102ORF1955P (86% identity) | Nsp596ORF6205P | |
| 6215 | recombinase | |||
| 1465 | 193 aa hypothetical protein | |||
| 1470 | R | 141 aa hypothetical protein | Nsp596ORF1475P | |
| 1475 | M | M.Nsp9414ORF30120P (60% identity) | M.Nsp596ORF1475P | |
| 1480 | aminoglycoside phosphotransferase | |||