Lactobacillus rhamnosus Lc 705 |
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Putative Lactobacillus rhamnosus Lc 705 RM systems
Ref: Kankainen,M. et al. Proc. Natl. Acad. Sci. U.S.A. (2009) In press
REBASE ref # 11253
| Sequence length: | GenBank #: | |
| Chromosome: | 2,968,598 bp | FM179323 (NC_013199) |
| plasmid pLC1: | 64,508 bp | FM179324 (NC_013200) |
REBASE acronym: LrhLc
Org_num: 5546
All begin LC705_, LC705_p
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 837 | protein without homology | |||
| 838 | S | S.LrhPenORF11395P (100% identity) | S.LrhLcORF838P | |
| 839 | protein without homology | |||
| 2087 | Conserved protein | |||
| 2088 | S | S2.LrhVSI43ORF9640P (96% identity) | S.LrhLcORF2091AP | |
| 2089 | Phage-related integrase | |||
| 2090 | S | S1.LrhVSI43ORF9640P (100% identity) | S.LrhLcORF2091BP | |
| 2091 | M | M.LrhsA5ORFBP (100% identity) | M.LrhLcORF2091P | |
| 2092 | R | LrhsA5ORFBP (99% identity) | LrhLcORF2091P | |
| 2093 | Transcriptional regulator | |||
| plasmid pLC1 | ||||
| 34 | Conserved protein | |||
| 35 | S | S.Lfe8711ORF12835P (100% identity) | S.LrhLcORF36P | |
| 36 | M | M.Lfe8711ORF12835P (100% identity) | M.LrhLcORF36P | |
| 37 | R | LrhVSI43ORF14060P (100% identity) | LrhLcORF36P | |
| 38 | Transposase, IS30 family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1265 | Amino acid permease | |||
| 1266 | M | M.LrhsA5ORFDP (100% identity) | M.LrhLcORF1266P | |
| 1267 | Conserved protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1946 | Transcriptional regulator, xre family | |||
| 1947 | R | LrhsA5MrrP (100% identity) | LrhLcMrr2P | |
| 1948 | Conserved protein | |||