Rhodococcus species 008 |
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Putative Rhodococcus species 008 RM systems
Ref: Loewen,P.C. and Brassinga,K. unpublished
REBASE ref # 22754
| Sequence length: | GenBank #: | |
| Chromosome: | 6,570,200 bp | CP012749 |
| plasmid pR8C1: | 108,503 bp | CP015204 |
| plasmid pR8L1: | 694,228 bp | CP015203 |
REBASE acronym: Rsp008
Org_num: 19720
All begin AOT96_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 29155 | 270 aa hypothetical protein | |||
| 29160 | M | M.RruP25ORFHP (92% identity) | AGCNNNNNNNTGGA | M.Rsp008I |
| 29165 | S | S.Csp035ORF6265P (59% identity) | AGCNNNNNNNTGGA | S.Rsp008I |
| 29170 | R | RspBH4ORF31695P (93% identity) | AGCNNNNNNNTGGA | Rsp008IP |
| 29175 | 475 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 395 | 1149 aa hypothetical protein | |||
| 400 | RM | RspB066ORF22360P (67% identity) | GCCCAT | Rsp008V |
| 405 | 779 aa hypothetical protein | |||
| 12205 | 229 aa hypothetical protein | |||
| 12210 | V | V.RspP2ORF14690P (100% identity) | CTCGAG | V.Rsp008IIIP |
| 12215 | 286 aa hypothetical protein | |||
| 12220 | M | M.RspBH4ORF1670P (100% identity) | CTCGAG | M.Rsp008III |
| 12225 | 171 aa hypothetical protein | |||
| 22060 | 116 aa hypothetical protein | |||
| 22065 | M | M.RqiVT6ORF6050P (93% identity) | CCCGGG | M.Rsp008ORF22065P |
| 22070 | 210 aa hypothetical protein | |||
| 22345 | 227 aa hypothetical protein | |||
| 22350 | R | RqiVT6ORF6350P (88% identity) | GCCGGC | Rsp008IIP |
| 22355 | M | M.RqiVT6ORF6350P (100% identity) | GCCGGC | M.Rsp008II |
| 22360 | 61 aa hypothetical protein | |||
| 30205 | TetR family transcriptional regulator | |||
| 30210 | M | M.RqiPM1ORF18905P (99% identity) | AACGTT | M.Rsp008ORF30210P |
| 30220 | Bcr/CflA family drug resistance efflux | |||
| plasmid pR8C1 | ||||
| 33865 | transposase | |||
| 33870 | RM | Rer8036I (99% identity) | ACGCAG | Rsp008IV |
| 33875 | NgoFVII family restriction endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pR8L1 | ||||
| 31545 | 70 aa hypothetical protein | |||
| 31550 | R | RerR138McrCP (60% identity) | Rsp008McrCP | |
| 31555 | 90 aa hypothetical protein | |||
| 31560 | R | RqiIGTS8McrBP (27% identity) | Rsp008McrBP | |
| 31565 | 218 aa hypothetical protein | |||