Helicobacter pylori B38 |
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Putative Helicobacter pylori B38 RM systems
Ref: Thiberge,J.M. et al. unpublished
REBASE ref # 11180
Complete sequence: 1,576,758 bp
GenBank #: FM991728 (NC_012973)
REBASE acronym: HpyB38
Org_num: 5479
All begin HELPY_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 443 | Polyphosphate kinase (Polyphosphoric acid | |||
| 444 | S | S.HpyGRE046ORF2280P (98% identity) | S.HpyB38ORF445P | |
| 445 | M | M.HpyKH6ORFQP (97% identity) | M.HpyB38ORF445P | |
| ??? | R | HpyGCT85ORFSP (91% identity) | HpyB38ORF445P | |
| 448 | 631 aa Conserved hypothetical protein | |||
| 504 | 228 aa Conserved hypothetical protein; putative | |||
| ??? | M | M.HpyPORF850P (95% identity) | M.HpyB38ORF505P | |
| 507 | S | Type I R-M system specificity subunit | S.HpyB38ORF505P | |
| ??? | R | HpyL033XVP (93% identity) | HpyB38ORF505P | |
| 510 | Hydroxyethylthiazole kinase | |||
| 574 | 85 aa Conserved hypothetical protein | |||
| 575 | S | S.HpyT001ORF4030P (59% identity) | S.HpyB38ORF575P | |
| 576 | Outer membrane protein HofF; putative signal | |||
| 1401 | 81 aa Hypothetical protein | |||
| 1402 | S | S.HpyCOL202ORF6670P (97% identity) | S.HpyB38ORF1402P | |
| 1403 | Formyltetrahydrofolate deformylase (Formyl-FH(4) | |||
| 1505 | 30 aa Conserved hypothetical protein | |||
| 1506 | S | S.HpySP314ORF3765P (97% identity) | S.HpyB38ORF1507P | |
| 1507 | M | M.HpySP317IV (95% identity) | M.HpyB38ORF1507P | |
| 1508 | R | HpyL018ORF7450P (95% identity) | HpyB38ORF1507P | |
| 1509 | 235 aa Conserved hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 44 | non-functional type II restriction | |||
| 45 | M | M1.HpyBG6IV (99% identity) | CCTC | M1.HpyB38ORF45P |
| ??? | M | M2.HpySP02VIII (83% identity) | CCTC | M2.HpyB38ORF45P |
| 48 | Symporter, SSS family (Proline Permease); | |||
| 87 | Malonyl CoA-acyl carrier protein transacylase | |||
| ??? | R | Hpy381FORFHP (96% identity) | GATC | HpyB38ORF90P |
| 90 | M | M.HpySP06II (97% identity) | GATC | M.HpyB38ORF90P |
| 91 | Alpha-1,2-fucosyltransferase | |||
| 264 | Exodeoxyribonuclease VII large subunit | |||
| 265 | M | M.HpyR11XI (98% identity) | TCGA | M.HpyB38ORF265P |
| 266 | 80 aa Hypothetical protein | |||
| ??? | R | HpyI013IIP (80% identity) | CCGG | HpyB38ORF269P |
| 269 | M | M.HpySP18VIII (99% identity) | CCGG | M.HpyB38ORF269P |
| 270 | ATP-dependent protease binding subunit/heat | |||
| 464 | GTP-binding elongation factor protein, TypA | |||
| 465 | M | M.HpyLI21ORF2235P (97% identity) | ACGT | M.HpyB38ORF465P |
| 466 | R | HpyL032ORF2395P (97% identity) | ACGT | HpyB38ORF465P |
| 468 | catalase; putative signal peptide | |||
| 698 | Outer membrane protein HorF | |||
| 699 | RM | HpySP101ORF3035P (69% identity) | HpyB38ORF699AP | |
| 700 | Transposase, OrfB, ISHp609 | |||
| 701 | Serine recombinase-transposase, OrfA, ISHp609 | |||
| 702 | 61 aa Conserved hypothetical protein | |||
| 703 | 85 aa Conserved hypothetical protein | |||
| 704 | RM | Fragment of type I restriction-modification | HpyB38ORF699BP | |
| 705 | anaerobic glycerol-3-phosphate | |||
| 847 | 406 aa Conserved hypothetical protein | |||
| ??? | R | HpyPO09IVP (96% identity) | GTAC | HpyB38ORF850P |
| 850 | M | M.HpyL003X (98% identity) | GTAC | M.HpyB38ORF850P |
| 851 | DNA gyrase subunit B (type II topoisomerase) | |||
| 892 | Flagellar hook protein FlgE | |||
| 893 | R | HpySP206VIIIP (91% identity) | GTNNAC | HpyB38ORF894P |
| 894 | M | M.Hpy0393ORF3535P (98% identity) | GTNNAC | M.HpyB38ORF894P |
| 895 | ATP-dependent single-stranded DNA helicase | |||
| 1055 | Biotin carboxylase (Acetyl-CoA carboxylase | |||
| 1056 | M | M.HpyF020XIV (100% identity) | TCNNGA | M.HpyB38ORF1056P |
| 1057 | R | HpyZ010XIIIP (98% identity) | TCNNGA | HpyB38ORF1056P |
| 1058 | 202 aa Conserved hypothetical protein | |||
| 1092 | 144 aa Conserved hypothetical protein | |||
| 1093 | M | M.HpyP107XVI (96% identity) | GCGC | M.HpyB38ORF1093P |
| 1094 | Anti-sigma 28 factor | |||
| 1181 | haloacid dehalogenase | |||
| 1182 | M | M.HpyPE117I (98% identity) | CATG | M.HpyB38ORF1182P |
| ??? | R | HpySP305IP (85% identity) | CATG | HpyB38ORF1182P |
| 1186 | Serine acetyltransferase (SAT) | |||
| 1326 | Carboxyl-terminal protease, S41A family; | |||
| 1327 | RM | Fragment of putative adenine methyltransferase, | HpyB38ORF1327P | |
| 1328 | Fragment of putative DNA methyltransferase, | |||
| 1328 | Fragment of putative DNA methyltransferase, | |||
| 1329 | R | HpyPO11ORF6610P (90% identity) | GATATC | HpyB38ORF1328P |
| 1330 | Fragment of conserved hypothetical protein (Part | |||
| 1339 | Fragment of putative adenine methyltransferase, | |||
| 1340 | R | HpyISR5VIIP (97% identity) | GANTC | HpyB38ORF1341P |
| 1341 | M | M.HpyLI28V (99% identity) | GANTC | M.HpyB38ORF1341P |
| 1342 | Fragment of putative adenine specific DNA | |||
| 1341 | Type II m6A methylase | |||
| ??? | RM | HpySP307ORF6295P (83% identity) | HpyB38ORF1342P | |
| 1345 | Nicotinate-nucleotide pyrophosphorylase | |||
| ??? | type II restriction enzyme | |||
| 1445 | RM | HpySP801ORF7315P (98% identity) | HpyB38ORF1445P | |
| 1446 | 191 aa Conserved hypothetical protein | |||
| 1490 | 118 aa Conserved hypothetical protein | |||
| 1491 | RM | HpyBGR4XVI (91% identity) | HpyB38ORF1491P | |
| 1492 | Type III R-M system restriction enzyme | |||
| 1538 | 67 aa Conserved hypothetical protein | |||
| 1539 | M | M.HpyCOL210XVI (97% identity) | TGCA | M.HpyB38ORF1539P |
| 1540 | R | HpyU201XIIIP (56% identity) | TGCA | HpyB38ORF1539P |
| 1541 | Ubiquinol cytochrome c oxidoreductase, | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 780 | 54 aa Conserved hypothetical protein | |||
| 781 | M | M.HpyKH13ORFCP (97% identity) | M.HpyB38ORF781P | |
| 782 | R | HpyAR2XVP (95% identity) | CTGCAG | HpyB38ORF781P |
| 783 | 2-oxoglutarate oxidoreductase OorC subunit | |||
| 1355 | transcriptional regulatory protein | |||
| ??? | M | M.Hpy173ORF1590P (95% identity) | M.HpyB38ORF1356P | |
| 1358 | R | HpyI016ORF6720P (94% identity) | HpyB38ORF1356P | |
| 1359 | Rod shape-determining protein (MreC) | |||
| 1369 | DNA/RNA endonuclease G (nucG) | |||
| 1370 | M | M.Hpy5056ORF6735P (95% identity) | M.HpyB38ORF1370P | |
| 1371 | R | HpyPE117ORF6940P (90% identity) | HpyB38ORF1370P | |
| 1372 | Biotin synthase(Biotin synthetase) | |||
| 1491 | type IIS restriction-modification | |||
| 1492 | R | HpyGRE043ORF7300P (95% identity) | HpyB38ORF1493P | |
| ??? | M | M.HpySP807XV (97% identity) | M.HpyB38ORF1493P | |
| 1495 | ATP-dependent DNA helicase RecG | |||