Helicobacter pylori K26A1 |
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Putative Helicobacter pylori K26A1 RM systems
Ref: Montano,V. et al. unpublished
REBASE ref # 22113
Complete sequence: 1,570,310 bp
GenBank #: CP011486
REBASE acronym: Hpy26A1
Org_num: 19633
All begin AA977_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2155 | polyphosphate kinase | |||
| 2165 | S | S.HpyNG06ORF2155P (96% identity) | S.Hpy26A1ORF2170P | |
| 2170 | M | pseudogene | M.Hpy26A1ORF2170P | |
| 2175 | R | HpySA7ORF2206P (93% identity) | Hpy26A1ORF2170P | |
| 2180 | 631 aa hypothetical protein | |||
| 3690 | membrane protein | |||
| 3700 | S | S.HpyL025ORF3725P (59% identity) | S.Hpy26A1ORF3700P | |
| 3705 | cadmium transporter | |||
| 3985 | hydroxyethylthiazole kinase | |||
| 3990 | R | HpyZ001ORF1510P (95% identity) | Hpy26A1ORF4000P | |
| 3995 | S | 141 aa hypothetical protein, partial | S.Hpy26A1ORF4000P | |
| 4000 | M | M.HpyZ010XV (94% identity) | M.Hpy26A1ORF4000P | |
| 4005 | modification methylase | |||
| 6810 | 30 aa hypothetical protein | |||
| 6815 | S | S.HpyDO4XIV (49% identity) | S.Hpy26A1ORF6815P | |
| 6820 | membrane protein | |||
| 6850 | 89 aa hypothetical protein | |||
| 6855 | S | S.HpyKA2X (93% identity) | S.Hpy26A1ORF6865P | |
| 6860 | CAAX protease | |||
| 6865 | M | M.HpyZ007ORF7205P (96% identity) | M.Hpy26A1ORF6865P | |
| 6870 | R | HpyH020ORF6715P (95% identity) | Hpy26A1ORF6865P | |
| 6875 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 260 | agmatine deiminase | |||
| 265 | M | M1.HpyKH17ORFOP (96% identity) | CCTC | M1.Hpy26A1ORF265P |
| 270 | M | M2.HpySA20ORF56P (98% identity) | CCTC | M2.Hpy26A1ORF265P |
| 275 | R | HpyZ007IIIP (95% identity) | CCTC | Hpy26A1ORF265P |
| 280 | restriction endonuclease | |||
| 275 | pseudogene | |||
| 280 | M | M.HpyZ009VII (99% identity) | GTSAC | M.Hpy26A1ORF280P |
| 285 | R | HpySA50ORF1883P (100% identity) | GTSAC | Hpy26A1ORF280P |
| 290 | proline:sodium symporter PutP | |||
| 475 | membrane protein | |||
| 480 | M | M.HpyZ001XI (98% identity) | GATC | M.Hpy26A1ORF480P |
| 485 | alpha-1,2-fucosyltransferase | |||
| 1285 | exodeoxyribonuclease VII large subunit | |||
| 1290 | M | M.HpySA50ORF1624P (97% identity) | TCGA | M.Hpy26A1ORF1290P |
| 1295 | 204 aa hypothetical protein | |||
| 1295 | 204 aa hypothetical protein | |||
| ??? | R | HpyZ007IIP (93% identity) | CCGG | Hpy26A1ORF1310P |
| 1310 | M | M.HpyZ009III (99% identity) | CCGG | M.Hpy26A1ORF1310P |
| 1315 | chaperone protein ClpB | |||
| 1545 | polysaccharide deacetylase | |||
| 1550 | R | HpyF007VIIP (93% identity) | CTNAG | Hpy26A1ORF1555P |
| 1555 | M | M.HpyH023ORF1510P (99% identity) | CTNAG | M.Hpy26A1ORF1555P |
| 1560 | 120 aa hypothetical protein | |||
| 2240 | glutamyl-tRNA synthetase | |||
| 2245 | M | M.HpyZ009ORF2240P (97% identity) | ATTAAT | M.Hpy26A1ORF2245P |
| 2250 | glycosyltransferase 9 family protein | |||
| 2255 | GTP-binding protein | |||
| 2260 | M | M.HpyZ001II (99% identity) | ACNGT | M.Hpy26A1ORF2260P |
| 2265 | R | HpyZ009IIP (98% identity) | ACNGT | Hpy26A1ORF2260P |
| 2270 | 390 aa hypothetical protein | |||
| 2270 | 390 aa hypothetical protein | |||
| 2275 | M | M.HpyPE104ORF2575P (97% identity) | ACGT | M.Hpy26A1ORF2275P |
| 2280 | R | HpyZ009ORF2275P (94% identity) | ACGT | Hpy26A1ORF2275P |
| 2285 | catalase | |||
| 2360 | DNA gyrase subunit B | |||
| 2365 | M | M.HpySA20ORF535P (98% identity) | GTAC | M.Hpy26A1ORF2365P |
| 2370 | R | HpySA50ORF1351P (95% identity) | GTAC | Hpy26A1ORF2365P |
| 2375 | membrane protein | |||
| 3175 | 3-5 exonuclease | |||
| 3180 | M | M.HpyZ001IV (98% identity) | CCNNGG | M.Hpy26A1ORF3180P |
| 3185 | R | HpyBR20XP (98% identity) | CCNNGG | Hpy26A1ORF3180P |
| 3190 | 3'-5' exonuclease | |||
| 4000 | pseudogene | |||
| 4005 | M | M.Hpyfe32ORF4755P (96% identity) | GGCC | M.Hpy26A1ORF4005P |
| 4010 | R | HpyZ001ORF1505P (95% identity) | GGCC | Hpy26A1ORF4005P |
| 4015 | membrane protein | |||
| 4300 | flagellar hook protein FlgE | |||
| 4305 | R | HpySA50ORF835P (92% identity) | GTNNAC | Hpy26A1ORF4310P |
| 4310 | M | M.HpyZ001XIII (95% identity) | GTNNAC | M.Hpy26A1ORF4310P |
| 4315 | ATP-dependent DNA helicase | |||
| 4950 | acetyl-CoA carboxylase | |||
| 4955 | M | M.HpySA20ORF1153P (98% identity) | TCNNGA | M.Hpy26A1ORF4955P |
| 4960 | R | HpyZ006IXP (96% identity) | TCNNGA | Hpy26A1ORF4955P |
| 4965 | Laminin subunit alpha-2 precursor | |||
| 5150 | 144 aa hypothetical protein | |||
| 5155 | M | M.HpyZ007XII (95% identity) | GCGC | M.Hpy26A1ORF5155P |
| 5160 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6275 | membrane protein | |||
| 6280 | M | M.HpySA7ORF6605P (98% identity) | CATG | M.Hpy26A1ORF6280P |
| 6285 | R | HpySA50ORF332P (63% identity) | CATG | Hpy26A1ORF6280P |
| 6290 | serine acetyltransferase | |||
| 6490 | DNA polymerase I | |||
| 6495 | S | S2.HpyCO7ORF7080P (96% identity) | S.Hpy26A1ORF6500P | |
| ??? | RM | Hpy120ORF7200P (90% identity) | Hpy26A1ORF6500P | |
| 6510 | amidophosphoribosyltransferase | |||
| 6635 | permease | |||
| 6640 | M | M2.HpyGT10II (99% identity) | CCATC | M1.Hpy26A1ORF6640P |
| 6645 | M | M1.HpyU429IV (91% identity) | CCATC | M2.Hpy26A1ORF6640P |
| 6650 | R | HpyH015VIP (98% identity) | CCATC | Hpy26A1ORF6640P |
| 6655 | membrane protein | |||
| 6730 | 145 aa hypothetical protein | |||
| 6735 | RM | Hpy25AEK9ORFA1P (86% identity) | Hpy26A1ORF6735P | |
| 6740 | DEAD/DEAH box helicase | |||
| 6950 | 67 aa hypothetical protein | |||
| 6955 | M | M.HpySA7ORF7440P (98% identity) | TGCA | M.Hpy26A1ORF6955P |
| 6960 | R | HpySA50ORF134P (97% identity) | TGCA | Hpy26A1ORF6955P |
| 6965 | ribonuclease N | |||
| 7040 | DNA methylase | |||
| 7045 | M | M1.HpySA20ORF1651P (98% identity) | GAAGA | M1.Hpy26A1ORF7045P |
| 7050 | M | HpyC126XP (39% identity) | GAAGA | M2.Hpy26A1ORF7045P |
| 7055 | R | HpyZ006VP (94% identity) | GAAGA | Hpy26A1ORF7045P |
| 7060 | chemotaxis protein CheY | |||
| 7110 | nicotinate-nucleotide pyrophosphorylase | |||
| 7115 | RM | HpySA7ORF7785P (79% identity) | Hpy26A1ORF7115P | |
| 7120 | peptidase S41 | |||
| 7225 | 62 aa hypothetical protein | |||
| 7230 | M | M.HpySA20ORF1682P (94% identity) | M.Hpy26A1ORF7230P | |
| 7235 | pseudogene | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6735 | type II restriction/-modification system | |||
| 6740 | R | HpyZ001ORF7390P (94% identity) | Hpy26A1ORF6745P | |
| ??? | M | M.HpyL003ORF7545P (90% identity) | M.Hpy26A1ORF6745P | |
| 6755 | ATP-dependent DNA helicase RecG | |||
| 6970 | biotin synthase | |||
| 6975 | R | HpyZ001ORF7575P (84% identity) | Hpy26A1ORF6980P | |
| 6980 | M | M.HpySP310ORF340P (91% identity) | M.Hpy26A1ORF6980P | |
| 6985 | endonuclease | |||
| 7030 | rod shape-determining protein MreC | |||
| 7035 | R | HpySA20ORF1650P (94% identity) | Hpy26A1ORF7040P | |
| 7040 | M | M.Hpy5024ORF7810P (95% identity) | M.Hpy26A1ORF7040P | |
| 7045 | restriction endonuclease subunit M | |||