Helicobacter pylori ausabrJ05 |
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Putative Helicobacter pylori ausabrJ05 RM systems
Ref: Montano,V. et al. unpublished
REBASE ref # 22113
Complete sequence: 1,510,564 bp
GenBank #: CP011485
REBASE acronym: HpyJ05
Org_num: 19545
All begin AA973_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2120 | polyphosphate kinase | |||
| 2130 | S | S.HpyB130AORF5420P (97% identity) | S.HpyJ05ORF2135P | |
| 2135 | M | M.HpyI027ORF2155P (90% identity) | M.HpyJ05ORF2135P | |
| 2140 | R | HpyID11ORF2100BP (62% identity) | HpyJ05ORF2135P | |
| 2145 | 631 aa hypothetical protein | |||
| 2420 | modification methylase | |||
| 2425 | M | M.HpyID11ORF4005P (96% identity) | M.HpyJ05ORF2425P | |
| 2430 | S | S.HpySP806XIV (93% identity) | S.HpyJ05ORF2425P | |
| 2435 | R | HpyS64ORFCP (94% identity) | HpyJ05ORF2425P | |
| 2440 | hydroxyethylthiazole kinase | |||
| 6650 | metal-dependent hydrolase | |||
| 6655 | R | HpyID11ORF7090P (90% identity) | HpyJ05ORF6660P | |
| 6660 | M | M.HpySG07ORF7135P (90% identity) | M.HpyJ05ORF6660P | |
| 6665 | CAAX protease | |||
| 6670 | S | S.HpyP004ORF6710P (92% identity) | S.HpyJ05ORF6660P | |
| 6675 | FAD-dependent thymidylate synthase | |||
| 7160 | formyltetrahydrofolate deformylase | |||
| 7165 | S | S.Hpy1136ORFFP (96% identity) | S.HpyJ05ORF7165P | |
| 7170 | 67 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 240 | agmatine deiminase | |||
| 245 | M | M1.Hpy84ORF120P (97% identity) | CCTC | M1.HpyJ05ORF245P |
| 250 | M | M2.HpyC61XIIP (98% identity) | CCTC | M2.HpyJ05ORF245P |
| 255 | R | HpyJA103IIIP (80% identity) | CCTC | HpyJ05ORF245P |
| 260 | proline:sodium symporter PutP | |||
| 450 | malonyl CoA-ACP transacylase | |||
| 460 | R | HpyPU006XP (92% identity) | GATC | HpyJ05ORF465P |
| 465 | M | M.HpyBG10IV (95% identity) | GATC | M.HpyJ05ORF465P |
| 470 | alpha-1,2-fucosyltransferase | |||
| 1280 | exodeoxyribonuclease VII large subunit | |||
| 1285 | M | pseudogene | TCGA | M.HpyJ05ORF1285P |
| 1290 | pseudogene | |||
| 1285 | pseudogene | |||
| 1290 | R | HpyID11IVP (95% identity) | CCGG | HpyJ05ORF1295P |
| 1295 | M | M.HpyID11IV (99% identity) | CCGG | M.HpyJ05ORF1295P |
| 1300 | chaperone protein ClpB | |||
| 1695 | GTP-binding protein LepA | |||
| 1700 | M | M.Hpyoh1ORF4535P (99% identity) | GCNGC | M.HpyJ05ORF1700P |
| 1705 | 92 aa hypothetical protein HMPREF1409_00362 | |||
| 2205 | membrane protein | |||
| 2210 | M | M.Hpyfe122ORF4805P (97% identity) | ATTAAT | M.HpyJ05ORF2210P |
| 2215 | glycosyltransferase 9 family protein | |||
| 2220 | GTP-binding protein | |||
| 2225 | M | M.HpyT016II (98% identity) | ACNGT | M.HpyJ05ORF2225P |
| 2230 | R | HpyOK307ORFDP (98% identity) | ACNGT | HpyJ05ORF2225P |
| 2235 | pseudogene | |||
| 2230 | pseudogene | |||
| 2235 | M | M.HpyID11ORF2205P (96% identity) | ACGT | M.HpyJ05ORF2235P |
| 2245 | R | HpyNP11ORF2300P (68% identity) | ACGT | HpyJ05ORF2235P |
| 2250 | 64 aa hypothetical protein | |||
| 2410 | membrane protein | |||
| 2415 | R | pseudogene | GGCC | HpyJ05ORF2420P |
| 2420 | M | M.HpyID11ORF4010P (98% identity) | GGCC | M.HpyJ05ORF2420P |
| 2425 | restriction endonuclease | |||
| 2720 | cadmium transporter | |||
| 2725 | M | M.Hpyfe16ORF3735P (99% identity) | GCSGC | M.HpyJ05ORF2725P |
| 2730 | R | HpyTW02ORF2780P (98% identity) | GCSGC | HpyJ05ORF2725P |
| 2735 | membrane protein | |||
| 3275 | membrane protein | |||
| 3280 | RM | HpyKH33ORFFP (77% identity) | HpyJ05ORF3280P | |
| 3285 | glycerol-3-phosphate dehydrogenase | |||
| 3910 | membrane protein | |||
| ??? | R | HpyNAB47ORFC1P (92% identity) | GTAC | HpyJ05ORF3925P |
| 3925 | M | M.Hpy84ORF3975P (94% identity) | GTAC | M.HpyJ05ORF3925P |
| 3930 | DNA gyrase subunit B | |||
| 4995 | 144 aa hypothetical protein | |||
| 5000 | M | M.HpySG05XIV (95% identity) | GCGC | M.HpyJ05ORF5000P |
| 5005 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5445 | hydrolase | |||
| 5450 | M | M.HpyCOL303I (96% identity) | CATG | M.HpyJ05ORF5450P |
| 5455 | R | HpyID11IP (75% identity) | CATG | HpyJ05ORF5450P |
| 5460 | serine acetyltransferase | |||
| 6135 | peptidase S41 | |||
| 6140 | R | HpyJ029XP (92% identity) | GANTC | HpyJ05ORF6145P |
| 6145 | M | M.HpyTW01VIII (99% identity) | GANTC | M.HpyJ05ORF6145P |
| 6150 | DNA methyltransferase | |||
| 6145 | DNA methyltransferase | |||
| 6150 | RM | HpyT030ORF285P (82% identity) | HpyJ05ORF6150P | |
| 6155 | nicotinate-nucleotide pyrophosphorylase | |||
| 6560 | 366 aa hypothetical protein | |||
| 6565 | M | M.Hpy120ORF7775P (94% identity) | M.HpyJ05ORF6565P | |
| 6570 | Type II restriction enzyme | |||
| 6565 | DNA methyltransferase | |||
| 6570 | R | HpyB130AORF475P (96% identity) | TGCA | HpyJ05ORF6575P |
| 6575 | M | M.Hpy84ORF6770P (97% identity) | TGCA | M.HpyJ05ORF6575P |
| 6580 | 67 aa hypothetical protein | |||
| 6735 | DEAD/DEAH box helicase | |||
| 6740 | RM | HpyPE05ORF7440P (63% identity) | HpyJ05ORF6740P | |
| 6745 | 176 aa hypothetical protein | |||
| 6815 | membrane protein | |||
| 6820 | R | HpyKG6VP (97% identity) | CCATC | HpyJ05ORF6825P |
| 6825 | M | M2.HpyT003IV (93% identity) | CCATC | M1.HpyJ05ORF6825P |
| 6830 | M | M2.Hpyfe71ORF135P (98% identity) | CCATC | M2.HpyJ05ORF6825P |
| 6835 | permease | |||
| 6960 | amidophosphoribosyltransferase | |||
| 6965 | R | HpyJO5XIP (95% identity) | GGATG | HpyJ05ORF6970P |
| 6970 | M | M.HpyPE21ORF7325P (73% identity) | GGATG | M2.HpyJ05ORF6970P |
| 6975 | M | M1.HpyPE21XIII (97% identity) | GGATG | M1.HpyJ05ORF6970P |
| 6980 | DNA polymerase I | |||
| 7230 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 7235 | M | M.HpyP107ORF6850P (99% identity) | CGCG | M.HpyJ05ORF7235P |
| 7240 | R | HpyUM065ORF7835P (97% identity) | CGCG | HpyJ05ORF7235P |
| 7245 | 72 aa hypothetical protein | |||
| 7275 | 231 aa hypothetical protein | |||
| 7280 | R | HpyV001IVP (93% identity) | CGWCG | HpyJ05ORF7285P |
| 7285 | M | M.HpyBT112ORF4530P (98% identity) | CGWCG | M.HpyJ05ORF7285P |
| 7290 | hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3620 | 54 aa hypothetical protein | |||
| 3625 | M | M.HpySWT13XIX (90% identity) | M.HpyJ05ORF3625P | |
| 3630 | R | Hpy225ORF600P (89% identity) | HpyJ05ORF3625P | |
| 3635 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 6210 | glycosyltransferase 9 family protein | |||
| 6215 | M | M.HpySP402ORF7630P (89% identity) | M.HpyJ05ORF6215P | |
| 6220 | R | HpyP76ORFMP (85% identity) | HpyJ05ORF6215P | |
| 6225 | rod shape-determining protein MreC | |||
| 6275 | endonuclease | |||
| 6280 | M | M.Hci798ORFHP (56% identity) | M.HpyJ05ORF6280P | |
| ??? | R | HpyKH39ORFLP (81% identity) | HpyJ05ORF6280P | |
| 6290 | pseudogene | |||
| 6725 | ATP-dependent DNA helicase RecG | |||
| 6730 | M | M.HpyID11ORF7025P (65% identity) | M.HpyJ05ORF6730P | |
| 6735 | R | HpyID11ORF7025P (90% identity) | HpyJ05ORF6730P | |
| 6740 | restriction endonuclease | |||