Helicobacter pylori CC33C |
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Putative Helicobacter pylori CC33C RM systems
Ref: Montano,V. et al. unpublished
REBASE ref # 22113
Complete sequence: 1,659,899 bp
GenBank #: CP011484
REBASE acronym: Hpy33C
Org_num: 19632
All begin AA976_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2500 | polyphosphate kinase | |||
| 2510 | S | S.HpyKH41ORFKP (98% identity) | S.Hpy33CORF2515P | |
| 2515 | M | M.HpyBS30ORF4665P (95% identity) | M.Hpy33CORF2515P | |
| 2520 | R | HpySP14ORF2370P (92% identity) | Hpy33CORF2515P | |
| 2525 | 631 aa hypothetical protein | |||
| 4085 | membrane protein | |||
| 4090 | S | S.Hpy2012ORF2630P (85% identity) | S.Hpy33CORF4090P | |
| 4095 | cadmium transporter | |||
| 4370 | hydroxyethylthiazole kinase | |||
| 4375 | R | HpyJO8ORF4020P (94% identity) | Hpy33CORF4380P | |
| 4380 | M | M.HpyPE107X (92% identity) | M.Hpy33CORF4380P | |
| 4385 | modification methylase | |||
| 7015 | metal-dependent hydrolase | |||
| 7020 | R | HpyU406IVP (96% identity) | Hpy33CORF7025P | |
| 7025 | M | M.HpySP414ORF7230P (95% identity) | M.Hpy33CORF7025P | |
| 7030 | S | S.Hpy7CORF7380P (96% identity) | S.Hpy33CORF7025P | |
| 7035 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 530 | agmatine deiminase | |||
| 535 | M | M1.HpyP109V (96% identity) | CCTC | M1.Hpy33CORF535P |
| ??? | M | M2.HpyCOL306ORF250P (90% identity) | CCTC | M2.Hpy33CORF535P |
| 545 | pseudogene | |||
| ??? | type II DNA modification enzyme | |||
| 545 | M | M.HpySW24XIV (99% identity) | GTSAC | M.Hpy33CORF545P |
| 550 | R | HpyGE4VIIIP (96% identity) | GTSAC | Hpy33CORF545P |
| 555 | proline:sodium symporter PutP | |||
| 765 | membrane protein | |||
| 770 | M | M.HpyCO5VIII (98% identity) | GATC | M.Hpy33CORF770P |
| 775 | alpha-1,2-fucosyltransferase | |||
| 1175 | elongation factor P | |||
| 1180 | M | M.HpyZ002ORF4590P (99% identity) | M.Hpy33CORF1180P | |
| 1185 | 256 aa hypothetical protein | |||
| 1190 | R | R1.HpyZ004ORF860P (99% identity) | R1.Hpy33CORF1180P | |
| 1195 | R | R1.HpyZ002ORF4590P (99% identity) | R2.Hpy33CORF1180P | |
| 1200 | N-acetylneuraminate synthase | |||
| 1635 | 80 aa hypothetical protein | |||
| 1640 | R | HpyCH114IVP (79% identity) | CCGG | Hpy33CORF1645P |
| 1645 | M | M.HpyZ004V (100% identity) | CCGG | M.Hpy33CORF1645P |
| 1650 | chaperone protein ClpB | |||
| 1885 | polysaccharide deacetylase | |||
| 1890 | R | HpySP803VIP (98% identity) | CTNAG | Hpy33CORF1895P |
| 1895 | M | M.HpyZ004VII (98% identity) | CTNAG | M.Hpy33CORF1895P |
| 1900 | 128 aa hypothetical protein | |||
| 2075 | GTP-binding protein LepA | |||
| 2080 | M | M.Hpybs1ORFFP (86% identity) | GCNGC | M.Hpy33CORF2080P |
| 2085 | 92 aa hypothetical protein L933_07365 | |||
| 2585 | membrane protein | |||
| 2590 | M | M.HpyNCI39XII (96% identity) | ATTAAT | M.Hpy33CORF2590P |
| 2595 | glycosyltransferase 9 family protein | |||
| 2600 | GTP-binding protein | |||
| 2605 | M | M.HpyCO5II (99% identity) | ACNGT | M.Hpy33CORF2605P |
| 2610 | R | Hpy26A1ORF2260P (97% identity) | ACNGT | Hpy33CORF2605P |
| 2615 | DNA methyltransferase | |||
| 2610 | restriction endonuclease | |||
| 2615 | M | M.HpyF007ORF2425P (98% identity) | ACGT | M.Hpy33CORF2615P |
| 2620 | R | HpyPR02ORF2440P (96% identity) | ACGT | Hpy33CORF2615P |
| 2625 | catalase | |||
| 2705 | DNA gyrase subunit B | |||
| 2710 | M | M.HpyZ004IX (99% identity) | GTAC | M.Hpy33CORF2710P |
| 2715 | R | HpyZ004IXP (99% identity) | GTAC | Hpy33CORF2710P |
| 2720 | membrane protein | |||
| 3515 | glycerol-3-phosphate dehydrogenase | |||
| 3520 | RM | HpyZ006ORF4005P (81% identity) | Hpy33CORF3520P | |
| 3525 | membrane protein | |||
| 3600 | 3-5 exonuclease | |||
| ??? | M | M.HpyCRI2ORF2595P (98% identity) | CCNNGG | M.Hpy33CORF3605P |
| ??? | R | HpyZ010VIP (83% identity) | CCNNGG | Hpy33CORF3605P |
| 3620 | acetone carboxylase subunit gamma | |||
| 4380 | restriction endonuclease | |||
| 4385 | M | M.HpyU303ORF4075P (99% identity) | GGCC | M.Hpy33CORF4385P |
| 4390 | R | HpyH020ORF4075P (98% identity) | GGCC | Hpy33CORF4385P |
| 4395 | membrane protein | |||
| 4660 | flagellar hook protein FlgE | |||
| 4665 | R | HpyME12IXP (96% identity) | GTNNAC | Hpy33CORF4670P |
| 4670 | M | M.HpyI017X (98% identity) | GTNNAC | M.Hpy33CORF4670P |
| 4675 | ATP-dependent DNA helicase | |||
| 5470 | methyltransferase | |||
| 5475 | M | M.HpyGM7XIV (99% identity) | TCNNGA | M.Hpy33CORF5475P |
| 5480 | R | HpyPU010XIVP (99% identity) | TCNNGA | Hpy33CORF5475P |
| 5485 | Laminin subunit alpha-2 precursor | |||
| 5670 | 144 aa hypothetical protein | |||
| 5675 | M | M.HpyCO3XII (98% identity) | GCGC | M.Hpy33CORF5675P |
| 5680 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5975 | membrane protein | |||
| 5980 | M | M.HpyU418XI (96% identity) | TCNGA | M.Hpy33CORF5980P |
| 5985 | R | 115 aa hypothetical protein | TCNGA | Hpy33CORF5980P |
| 5990 | purine nucleoside phosphorylase | |||
| 6150 | hydrolase | |||
| 6155 | M | M.HpyZ002I (99% identity) | CATG | M.Hpy33CORF6155P |
| 6160 | 59 aa hypothetical protein | |||
| 6855 | peptidase S41 | |||
| 6860 | R | HpyJO8VIIIP (97% identity) | GANTC | Hpy33CORF6865P |
| 6865 | M | M.HpyKE21ORF15120P (99% identity) | GANTC | M.Hpy33CORF6865P |
| 6870 | DNA methyltransferase | |||
| 6865 | DNA methyltransferase | |||
| 6870 | RM | HpyI004ORF6620P (82% identity) | Hpy33CORF6870P | |
| 6875 | nicotinate-nucleotide pyrophosphorylase | |||
| 6925 | chemotaxis protein CheY | |||
| 6935 | R | HpyCO8ORF6535P (97% identity) | Hpy33CORF6935P | |
| 6940 | 67 aa hypothetical protein | |||
| 7105 | DEAD/DEAH box helicase | |||
| 7110 | RM | HpyCO1XVI (95% identity) | Hpy33CORF7110P | |
| 7115 | 180 aa hypothetical protein | |||
| 7190 | membrane protein | |||
| 7195 | R | HpyIS4IIIP (97% identity) | CCATC | Hpy33CORF7200P |
| 7200 | M | M2.HpySP707III (93% identity) | CCATC | M2.Hpy33CORF7200P |
| 7205 | M | M1.HpyKH38ORFJP (98% identity) | CCATC | M1.Hpy33CORF7200P |
| 7210 | permease | |||
| 7335 | amidophosphoribosyltransferase | |||
| 7340 | RM | HpyPO11ORF7395P (98% identity) | Hpy33CORF7340P | |
| 7345 | S | S.HpyCOL307ORF7250AP (95% identity) | S1.Hpy33CORF7340P | |
| 7350 | S | S.Hpyfe123ORF265P (41% identity) | S2.Hpy33CORF7340P | |
| 7355 | DNA polymerase I | |||
| 7760 | adenine methyltransferase | |||
| 7765 | M | M.HpyCO1ORF7430P (98% identity) | GAAGA | M.Hpy33CORF7765P |
| 7770 | DNA methyltransferase | |||
| 7765 | restriction endonuclease subunit M | |||
| ??? | M | M.HpyU201ORF7790P (99% identity) | M.Hpy33CORF7770P | |
| 7780 | 198 aa hypothetical protein | |||
| 7975 | transposase | |||
| 7980 | RM | HpyZ002ORF7455P (99% identity) | Hpy33CORF7980P | |
| 5 | translation elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7090 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyC010ORF7380P (95% identity) | M.Hpy33CORF7095P | |
| 7105 | R | HpyLI03ORF7395P (95% identity) | Hpy33CORF7095P | |
| 7110 | type II restriction/-modification system | |||
| 7680 | biotin synthase | |||
| 7685 | R | HpyZ010ORF6735P (91% identity) | Hpy33CORF7690P | |
| 7690 | M | M.HpySWT11XV (91% identity) | M.Hpy33CORF7690P | |
| 7695 | endonuclease | |||
| 7750 | rod shape-determining protein MreC | |||
| 7755 | R | HpyJ001ORF6655P (92% identity) | Hpy33CORF7760P | |
| 7760 | M | M.HpyPO12ORF6625P (95% identity) | M.Hpy33CORF7760P | |
| 7765 | restriction endonuclease subunit M | |||