Helicobacter pylori DU15 |
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Putative Helicobacter pylori DU15 RM systems
Ref: Montano,V. et al. unpublished
REBASE ref # 22113
Complete sequence: 1,614,411 bp
GenBank #: CP011483
REBASE acronym: HpyDU15
Org_num: 19631
All begin EE66_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2210 | membrane protein | |||
| 2215 | M | M.HpyMM02XII (90% identity) | M.HpyDU15ORF2215P | |
| ??? | S | S.Hpyfe54ORF3025P (48% identity) | S1.HpyDU15ORF2215P | |
| ??? | S | S2.Hpy21ORF469P (68% identity) | S2.HpyDU15ORF2215P | |
| 2225 | R | HpyK042XVIP (97% identity) | HpyDU15ORF2215P | |
| 2230 | hydroxyethylthiazole kinase | |||
| 2515 | cadmium transporter | |||
| 2520 | S | S.HpyKG7ORF4250P (97% identity) | S.HpyDU15ORF2520P | |
| 2525 | 48 aa hypothetical protein | |||
| 4105 | 631 aa hypothetical protein | |||
| 4110 | R | HpyK013ORF2380P (94% identity) | HpyDU15ORF4115P | |
| 4115 | M | M.HpyJ019X (97% identity) | M.HpyDU15ORF4115P | |
| 4120 | S | S.HpyCOL204VII (98% identity) | S.HpyDU15ORF4115P | |
| 4130 | polyphosphate kinase | |||
| 7090 | FAD-dependent thymidylate synthase | |||
| 7095 | S | S.HpyOK80ORFFP (96% identity) | S.HpyDU15ORF7105P | |
| 7100 | CAAX protease | |||
| 7105 | M | M.HpyOK303ORFHP (97% identity) | M.HpyDU15ORF7105P | |
| 7110 | R | Hpyfe23ORF7685P (97% identity) | HpyDU15ORF7105P | |
| 7115 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 655 | 59 aa hypothetical protein | |||
| 660 | M | M.HpyT029I (99% identity) | CATG | M.HpyDU15ORF660P |
| 665 | hydrolase | |||
| 1110 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1115 | M | M.HpyMKF8ORF1078P (96% identity) | GCGC | M.HpyDU15ORF1115P |
| 1120 | 144 aa hypothetical protein | |||
| 1285 | Laminin subunit alpha-2 precursor | |||
| 1290 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | HpyDU15ORF1295P |
| 1295 | M | M.HpyJA114X (98% identity) | TCNNGA | M.HpyDU15ORF1295P |
| 1300 | acetyl-CoA carboxylase | |||
| 1925 | ATP-dependent DNA helicase | |||
| 1930 | M | M.Hpy3192ORF5320P (98% identity) | GTNNAC | M.HpyDU15ORF1930P |
| 1935 | R | Hpyfe6ORF2680P (98% identity) | GTNNAC | HpyDU15ORF1930P |
| 1940 | flagellar hook protein FlgE | |||
| 3905 | 403 aa hypothetical protein | |||
| ??? | R | HpyOK306ORFXP (96% identity) | GTAC | HpyDU15ORF3920P |
| 3920 | M | M.HpyK044VIII (99% identity) | GTAC | M.HpyDU15ORF3920P |
| 3925 | DNA gyrase subunit B | |||
| 4010 | catalase | |||
| 4015 | R | Hpyfe106ORF4905P (99% identity) | ACGT | HpyDU15ORF4020P |
| 4020 | M | M.HpyCHN1ORF4470P (99% identity) | ACGT | M.HpyDU15ORF4020P |
| 4025 | restriction endonuclease | |||
| 4020 | DNA methyltransferase | |||
| 4025 | R | Hpyfe88ORF4775P (99% identity) | ACNGT | HpyDU15ORF4030P |
| 4030 | M | M.Hpyfe76ORF4780P (97% identity) | ACNGT | M.HpyDU15ORF4030P |
| 4035 | GTP-binding protein | |||
| 4040 | glycosyltransferase 9 family protein | |||
| 4045 | M | M.HpyK029II (98% identity) | ATTAAT | M.HpyDU15ORF4045P |
| 4050 | glutamyl-tRNA synthetase | |||
| 4740 | 125 aa hypothetical protein | |||
| 4745 | M | M.HpyK028VI (99% identity) | CTNAG | M.HpyDU15ORF4745P |
| 4750 | R | HpyM26CORFQP (99% identity) | CTNAG | HpyDU15ORF4745P |
| 4755 | polysaccharide deacetylase | |||
| 4985 | chaperone protein ClpB | |||
| 4990 | M | M.HpyNP09V (99% identity) | CCGG | M.HpyDU15ORF4990P |
| 4995 | R | HpyK005IXP (97% identity) | CCGG | HpyDU15ORF4990P |
| 5000 | exodeoxyribonuclease VII large subunit | |||
| 5695 | membrane protein | |||
| 5700 | M | M.HpyU205IX (99% identity) | GATC | M.HpyDU15ORF5700P |
| 5705 | alpha-1,2-fucosyltransferase | |||
| 6335 | DNA methylase | |||
| 6340 | R | HpySG13VP (96% identity) | CCTC | HpyDU15ORF6345P |
| 6345 | DNA methyltransferase | |||
| 6350 | M | M1.Hpyfe110ORF7335P (98% identity) | CCTC | M2.HpyDU15ORF6345P |
| 6355 | agmatine deiminase | |||
| 6785 | DNA polymerase I | |||
| ??? | S | S.HpyNCI23ORFXP (93% identity) | S1.HpyDU15ORF6795P | |
| ??? | S | S.HpyP108ORF7050P (36% identity) | S2.HpyDU15ORF6795P | |
| 6795 | RM | HpyQ59ORFTP (98% identity) | HpyDU15ORF6795P | |
| 6800 | amidophosphoribosyltransferase | |||
| 7010 | 30 aa hypothetical protein | |||
| 7015 | RM | HpyJA106XV (93% identity) | HpyDU15ORF7015P | |
| 7020 | 718 aa hypothetical protein | |||
| 7200 | 67 aa hypothetical protein | |||
| 7205 | M | M.Hpy1136ORFGP (76% identity) | TGCA | M.HpyDU15ORF7205P |
| 7210 | 107 aa hypothetical protein | |||
| 7680 | pseudogene | |||
| ??? | M | restriction endonuclease subunit M | GAAGA | M1.HpyDU15ORF7685P |
| 7690 | M | M1.Hpyfe123ORF7145P (100% identity) | GAAGA | M2.HpyDU15ORF7685P |
| 7695 | R | Hpyfe15ORF6865P (98% identity) | GAAGA | HpyDU15ORF7685P |
| 7700 | chemotaxis protein CheY | |||
| 7750 | nicotinate-nucleotide pyrophosphorylase | |||
| 7755 | RM | HpyOK95ORFJP (85% identity) | HpyDU15ORF7755P | |
| 7760 | peptidase S41 | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6470 | endonuclease | |||
| ??? | M | HpyK029ORF6610P (53% identity) | M.HpyDU15ORF6475P | |
| 6480 | R | M.HpyDU15ORF6475P (51% identity) | HpyDU15ORF6475P | |
| 6485 | biotin synthase | |||
| 7020 | 718 aa hypothetical protein | |||
| ??? | R | HpyCHN7ORF7180P (95% identity) | HpyDU15ORF7030P | |
| 7030 | M | M.HpyH137ORF40P (29% identity) | M1.HpyDU15ORF7030P | |
| 7035 | M | M1.Hpy193ORFXP (96% identity) | M2.HpyDU15ORF7030P | |
| 7040 | ATP-dependent DNA helicase RecG | |||
| 7670 | rod shape-determining protein MreC | |||
| 7675 | R | Hpyfe124ORF6905P (95% identity) | HpyDU15ORF7680P | |
| 7680 | M | M.HpyK99ORFOP (96% identity) | M.HpyDU15ORF7680P | |
| 7685 | restriction endonuclease subunit M | |||